miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28039 3' -56.1 NC_005887.1 + 1506 0.7 0.383936
Target:  5'- gCUUCGCCGGUGGAuCCGAcuGCaCGAa -3'
miRNA:   3'- gGAAGCGGCUACUUcGGCU--CGcGCUa -5'
28039 3' -56.1 NC_005887.1 + 4244 0.69 0.411725
Target:  5'- uCCUgcUCG-CGAUGGAGCaCGgcaAGCGCGAc -3'
miRNA:   3'- -GGA--AGCgGCUACUUCG-GC---UCGCGCUa -5'
28039 3' -56.1 NC_005887.1 + 4623 0.74 0.197568
Target:  5'- gCCgcggCGCCGGUGGccGCCG-GCGCGAUc -3'
miRNA:   3'- -GGaa--GCGGCUACUu-CGGCuCGCGCUA- -5'
28039 3' -56.1 NC_005887.1 + 4898 0.72 0.264574
Target:  5'- --gUCGCCGA--GGGCCG-GCGCGAg -3'
miRNA:   3'- ggaAGCGGCUacUUCGGCuCGCGCUa -5'
28039 3' -56.1 NC_005887.1 + 5156 0.67 0.533997
Target:  5'- aUCUaCGCCGAgcUGAAggacGCCGAGC-CGAc -3'
miRNA:   3'- -GGAaGCGGCU--ACUU----CGGCUCGcGCUa -5'
28039 3' -56.1 NC_005887.1 + 7397 0.66 0.611019
Target:  5'- aCCUgcgcacgccCGCCGAguucGAAGCCG-GCGaCGGc -3'
miRNA:   3'- -GGAa--------GCGGCUa---CUUCGGCuCGC-GCUa -5'
28039 3' -56.1 NC_005887.1 + 11051 0.69 0.402324
Target:  5'- aCCggugCGCCGAUGccGGUCGAGCuCGAc -3'
miRNA:   3'- -GGaa--GCGGCUACu-UCGGCUCGcGCUa -5'
28039 3' -56.1 NC_005887.1 + 14702 0.71 0.308339
Target:  5'- --gUCGCgGcgGGcgGGCCGGGCGCGGc -3'
miRNA:   3'- ggaAGCGgCuaCU--UCGGCUCGCGCUa -5'
28039 3' -56.1 NC_005887.1 + 15072 0.69 0.39306
Target:  5'- --gUCGCCGAagGGAGCCGccGGCGUGu- -3'
miRNA:   3'- ggaAGCGGCUa-CUUCGGC--UCGCGCua -5'
28039 3' -56.1 NC_005887.1 + 15227 0.69 0.408891
Target:  5'- --aUCGCCGAcgagucgacgaagcUGAAGUCGAcGCGCGu- -3'
miRNA:   3'- ggaAGCGGCU--------------ACUUCGGCU-CGCGCua -5'
28039 3' -56.1 NC_005887.1 + 15581 0.67 0.533997
Target:  5'- -aUUCGCUGAUcgccGAAGCUGAGaCGCa-- -3'
miRNA:   3'- ggAAGCGGCUA----CUUCGGCUC-GCGcua -5'
28039 3' -56.1 NC_005887.1 + 17440 0.67 0.530762
Target:  5'- aCggUGCCGAUccggcugcugcgaaGAAGaCCGAGCGCGc- -3'
miRNA:   3'- gGaaGCGGCUA--------------CUUC-GGCUCGCGCua -5'
28039 3' -56.1 NC_005887.1 + 20207 1.07 0.000828
Target:  5'- cCCUUCGCCGAUGAAGCCGAGCGCGAUc -3'
miRNA:   3'- -GGAAGCGGCUACUUCGGCUCGCGCUA- -5'
28039 3' -56.1 NC_005887.1 + 21026 0.7 0.374954
Target:  5'- aCCg--GCCGAUGcGGUCG-GCGCGGUg -3'
miRNA:   3'- -GGaagCGGCUACuUCGGCuCGCGCUA- -5'
28039 3' -56.1 NC_005887.1 + 22100 0.67 0.501991
Target:  5'- cCCUUCuGUgGAaacUGcuGCCGGGUGCGAUu -3'
miRNA:   3'- -GGAAG-CGgCU---ACuuCGGCUCGCGCUA- -5'
28039 3' -56.1 NC_005887.1 + 26776 0.66 0.599887
Target:  5'- gCUUCGgCGAUcagcGAA-UCGAGCGCGGUc -3'
miRNA:   3'- gGAAGCgGCUA----CUUcGGCUCGCGCUA- -5'
28039 3' -56.1 NC_005887.1 + 27193 0.69 0.411725
Target:  5'- aCUUCGCC-AUGccGUCGAGCGCc-- -3'
miRNA:   3'- gGAAGCGGcUACuuCGGCUCGCGcua -5'
28039 3' -56.1 NC_005887.1 + 27755 0.66 0.611019
Target:  5'- --gUgGCCGAU---GCCGAGCGCGc- -3'
miRNA:   3'- ggaAgCGGCUAcuuCGGCUCGCGCua -5'
28039 3' -56.1 NC_005887.1 + 28456 0.68 0.440726
Target:  5'- cCCUUCGUCGGcuUGuuGCCGGGcCGCu-- -3'
miRNA:   3'- -GGAAGCGGCU--ACuuCGGCUC-GCGcua -5'
28039 3' -56.1 NC_005887.1 + 30866 0.66 0.588784
Target:  5'- ---gCGCUGGuccUGAuGCCaGAGCGCGAg -3'
miRNA:   3'- ggaaGCGGCU---ACUuCGG-CUCGCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.