Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28039 | 3' | -56.1 | NC_005887.1 | + | 32227 | 0.67 | 0.552455 |
Target: 5'- uUCUUCGUCGuacGUGcAGCCGAucagcuggccgucgGCGCGGg -3' miRNA: 3'- -GGAAGCGGC---UACuUCGGCU--------------CGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 32409 | 0.67 | 0.512571 |
Target: 5'- cCUUUCGUCGAcGuGGCCG-GCgGCGAUg -3' miRNA: 3'- -GGAAGCGGCUaCuUCGGCuCG-CGCUA- -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 33884 | 0.67 | 0.512571 |
Target: 5'- --gUCGCCGAgcgGuugcGCCGGGCGCu-- -3' miRNA: 3'- ggaAGCGGCUa--Cuu--CGGCUCGCGcua -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 34375 | 0.67 | 0.54483 |
Target: 5'- cCCcgCGUaucaGAgUGcGGCCGGGCGCGAg -3' miRNA: 3'- -GGaaGCGg---CU-ACuUCGGCUCGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 36690 | 0.67 | 0.533997 |
Target: 5'- gCCUUCGCCGGUGccGCaugcuucgcuuCGAGCucGCGu- -3' miRNA: 3'- -GGAAGCGGCUACuuCG-----------GCUCG--CGCua -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 37421 | 0.69 | 0.421261 |
Target: 5'- gCCUgcaCGCCaGGUGcgGAGUgGAGCGCGGc -3' miRNA: 3'- -GGAa--GCGG-CUAC--UUCGgCUCGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 38136 | 0.75 | 0.189156 |
Target: 5'- aCCg-CGgCGAUGAaaaugccggacaucaGGCCGAGCGCGAa -3' miRNA: 3'- -GGaaGCgGCUACU---------------UCGGCUCGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 39042 | 0.68 | 0.480094 |
Target: 5'- gUCUUCaGCCGAUGccaGAGCUGcgucgccGGCGUGAUc -3' miRNA: 3'- -GGAAG-CGGCUAC---UUCGGC-------UCGCGCUA- -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 39897 | 0.67 | 0.512571 |
Target: 5'- gCC-UCGUCGAcGgcGCCGuagcGCGCGAg -3' miRNA: 3'- -GGaAGCGGCUaCuuCGGCu---CGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 40332 | 0.7 | 0.374954 |
Target: 5'- aCgUUCGCCGccGAAauggacuggccGUCGAGCGCGGc -3' miRNA: 3'- -GgAAGCGGCuaCUU-----------CGGCUCGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 40950 | 0.66 | 0.611019 |
Target: 5'- gCCgcUGCCGAgcGGGCCcaugaugaacGAGCGCGAc -3' miRNA: 3'- -GGaaGCGGCUacUUCGG----------CUCGCGCUa -5' |
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28039 | 3' | -56.1 | NC_005887.1 | + | 41409 | 0.67 | 0.512571 |
Target: 5'- gCCUUCGCCGAagcacucGggGCacucgcgaugCGGGuCGCGAc -3' miRNA: 3'- -GGAAGCGGCUa------CuuCG----------GCUC-GCGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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