miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28040 3' -59.3 NC_005887.1 + 20096 1.07 0.000357
Target:  5'- cUGCUGCGCGCCACCGUCGCUGAUCGUg -3'
miRNA:   3'- -ACGACGCGCGGUGGCAGCGACUAGCA- -5'
28040 3' -59.3 NC_005887.1 + 31067 0.75 0.095703
Target:  5'- aGCUGCGCGCCuuccuuguCCuUCGCcUGGUCGg -3'
miRNA:   3'- aCGACGCGCGGu-------GGcAGCG-ACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 15561 0.75 0.110229
Target:  5'- gGC-GCGCGCgACCGcgcucgauUCGCUGAUCGc -3'
miRNA:   3'- aCGaCGCGCGgUGGC--------AGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 30811 0.74 0.130381
Target:  5'- cGCUGCGCGCCGa-GcUGCUGAUCa- -3'
miRNA:   3'- aCGACGCGCGGUggCaGCGACUAGca -5'
28040 3' -59.3 NC_005887.1 + 2447 0.72 0.162542
Target:  5'- -uCUGCGCGgCACCGUaUGCUGGUCc- -3'
miRNA:   3'- acGACGCGCgGUGGCA-GCGACUAGca -5'
28040 3' -59.3 NC_005887.1 + 36874 0.72 0.167031
Target:  5'- gUGCUGCGCcaucgGCCugCGUCGUggugGAUgCGg -3'
miRNA:   3'- -ACGACGCG-----CGGugGCAGCGa---CUA-GCa -5'
28040 3' -59.3 NC_005887.1 + 40147 0.72 0.171632
Target:  5'- cGCUGCGCGCCGCgcUCGCcGcgUGUg -3'
miRNA:   3'- aCGACGCGCGGUGgcAGCGaCuaGCA- -5'
28040 3' -59.3 NC_005887.1 + 41358 0.71 0.196364
Target:  5'- ---cGCGCGCCGCCGggaaGCUGuUCGa -3'
miRNA:   3'- acgaCGCGCGGUGGCag--CGACuAGCa -5'
28040 3' -59.3 NC_005887.1 + 32453 0.71 0.2071
Target:  5'- gGUUGCGCaGCCACUG-CGCggcgugcgGAUCGa -3'
miRNA:   3'- aCGACGCG-CGGUGGCaGCGa-------CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 5156 0.7 0.212656
Target:  5'- cGUcgGCGCGCCGCUGaUGCUGAUgGc -3'
miRNA:   3'- aCGa-CGCGCGGUGGCaGCGACUAgCa -5'
28040 3' -59.3 NC_005887.1 + 22975 0.7 0.212656
Target:  5'- aGCUGCGCGagcauggcgCGuuGcCGCUGAUCGa -3'
miRNA:   3'- aCGACGCGCg--------GUggCaGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 11558 0.7 0.21834
Target:  5'- cGCaGCGCGCgGCgGUCGCgGaAUCGg -3'
miRNA:   3'- aCGaCGCGCGgUGgCAGCGaC-UAGCa -5'
28040 3' -59.3 NC_005887.1 + 3331 0.7 0.21834
Target:  5'- cGCaGCaaGCCGCCGUCGaCUGcgCGg -3'
miRNA:   3'- aCGaCGcgCGGUGGCAGC-GACuaGCa -5'
28040 3' -59.3 NC_005887.1 + 13525 0.7 0.230097
Target:  5'- gGCaUGCGCGCCACgaUCGCgaaugcGAUCGg -3'
miRNA:   3'- aCG-ACGCGCGGUGgcAGCGa-----CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 40771 0.69 0.255212
Target:  5'- cGCcGCGCGCCGCCGa-GCcggcGGUCGa -3'
miRNA:   3'- aCGaCGCGCGGUGGCagCGa---CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 29642 0.69 0.268591
Target:  5'- cUGCUGCGCGaCCAgCGUgCGCg---CGUg -3'
miRNA:   3'- -ACGACGCGC-GGUgGCA-GCGacuaGCA- -5'
28040 3' -59.3 NC_005887.1 + 15004 0.69 0.268591
Target:  5'- cGuCUGCGCGCCGCUG-CGCgUGGcgcagUCGa -3'
miRNA:   3'- aC-GACGCGCGGUGGCaGCG-ACU-----AGCa -5'
28040 3' -59.3 NC_005887.1 + 27250 0.69 0.268591
Target:  5'- cUGCaucGCGCGCCgGCCcgcGUCGCcaaUGAUCGg -3'
miRNA:   3'- -ACGa--CGCGCGG-UGG---CAGCG---ACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 28553 0.69 0.268591
Target:  5'- gGCUGCugaauuuguagGCGUCGCCGccCGCUGcgCGg -3'
miRNA:   3'- aCGACG-----------CGCGGUGGCa-GCGACuaGCa -5'
28040 3' -59.3 NC_005887.1 + 26745 0.69 0.275491
Target:  5'- cUGCUGCGCGaCGcCCGUgCGCUGcGUCu- -3'
miRNA:   3'- -ACGACGCGCgGU-GGCA-GCGAC-UAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.