miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28040 3' -59.3 NC_005887.1 + 38226 0.67 0.369402
Target:  5'- aGCcuUGCGCGUgGCCGggauggucgagCGCUcGAUCGa -3'
miRNA:   3'- aCG--ACGCGCGgUGGCa----------GCGA-CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 29698 0.68 0.303753
Target:  5'- aGCUGCacGCGCagccacuCGCCGUCGCgucgcagGAUCa- -3'
miRNA:   3'- aCGACG--CGCG-------GUGGCAGCGa------CUAGca -5'
28040 3' -59.3 NC_005887.1 + 28193 0.68 0.304506
Target:  5'- gGCUGUGCGCCGCaucagCGCcGcgCGUc -3'
miRNA:   3'- aCGACGCGCGGUGgca--GCGaCuaGCA- -5'
28040 3' -59.3 NC_005887.1 + 14027 0.68 0.312117
Target:  5'- cGCcgGCGCGCCGCCGgCGCagccUGAgaCGa -3'
miRNA:   3'- aCGa-CGCGCGGUGGCaGCG----ACUa-GCa -5'
28040 3' -59.3 NC_005887.1 + 22114 0.68 0.32777
Target:  5'- cUGCUGCcggGUGCgAUUGgcUCGCUGAUCGc -3'
miRNA:   3'- -ACGACG---CGCGgUGGC--AGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 25669 0.67 0.343996
Target:  5'- cGCaGCGCGUCGCCaUCGUcGGUCa- -3'
miRNA:   3'- aCGaCGCGCGGUGGcAGCGaCUAGca -5'
28040 3' -59.3 NC_005887.1 + 36170 0.67 0.343996
Target:  5'- cGCgGCGCGUCACCGU-GCcGAcCGg -3'
miRNA:   3'- aCGaCGCGCGGUGGCAgCGaCUaGCa -5'
28040 3' -59.3 NC_005887.1 + 32752 0.67 0.34731
Target:  5'- cGCgUGCGCGCCggcgcgcgccaugcaGCCGgcucgugCGCagGAUCGg -3'
miRNA:   3'- aCG-ACGCGCGG---------------UGGCa------GCGa-CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 26911 0.67 0.360792
Target:  5'- aGCUGCGC-CCGa-GUCGCUGGcCGc -3'
miRNA:   3'- aCGACGCGcGGUggCAGCGACUaGCa -5'
28040 3' -59.3 NC_005887.1 + 27250 0.69 0.268591
Target:  5'- cUGCaucGCGCGCCgGCCcgcGUCGCcaaUGAUCGg -3'
miRNA:   3'- -ACGa--CGCGCGG-UGG---CAGCG---ACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 28553 0.69 0.268591
Target:  5'- gGCUGCugaauuuguagGCGUCGCCGccCGCUGcgCGg -3'
miRNA:   3'- aCGACG-----------CGCGGUGGCa-GCGACuaGCa -5'
28040 3' -59.3 NC_005887.1 + 40771 0.69 0.255212
Target:  5'- cGCcGCGCGCCGCCGa-GCcggcGGUCGa -3'
miRNA:   3'- aCGaCGCGCGGUGGCagCGa---CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 15561 0.75 0.110229
Target:  5'- gGC-GCGCGCgACCGcgcucgauUCGCUGAUCGc -3'
miRNA:   3'- aCGaCGCGCGgUGGC--------AGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 40147 0.72 0.171632
Target:  5'- cGCUGCGCGCCGCgcUCGCcGcgUGUg -3'
miRNA:   3'- aCGACGCGCGGUGgcAGCGaCuaGCA- -5'
28040 3' -59.3 NC_005887.1 + 41358 0.71 0.196364
Target:  5'- ---cGCGCGCCGCCGggaaGCUGuUCGa -3'
miRNA:   3'- acgaCGCGCGGUGGCag--CGACuAGCa -5'
28040 3' -59.3 NC_005887.1 + 32453 0.71 0.2071
Target:  5'- gGUUGCGCaGCCACUG-CGCggcgugcgGAUCGa -3'
miRNA:   3'- aCGACGCG-CGGUGGCaGCGa-------CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 22975 0.7 0.212656
Target:  5'- aGCUGCGCGagcauggcgCGuuGcCGCUGAUCGa -3'
miRNA:   3'- aCGACGCGCg--------GUggCaGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 5156 0.7 0.212656
Target:  5'- cGUcgGCGCGCCGCUGaUGCUGAUgGc -3'
miRNA:   3'- aCGa-CGCGCGGUGGCaGCGACUAgCa -5'
28040 3' -59.3 NC_005887.1 + 11558 0.7 0.21834
Target:  5'- cGCaGCGCGCgGCgGUCGCgGaAUCGg -3'
miRNA:   3'- aCGaCGCGCGgUGgCAGCGaC-UAGCa -5'
28040 3' -59.3 NC_005887.1 + 13525 0.7 0.230097
Target:  5'- gGCaUGCGCGCCACgaUCGCgaaugcGAUCGg -3'
miRNA:   3'- aCG-ACGCGCGGUGgcAGCGa-----CUAGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.