miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 3' -46.5 NC_005887.1 + 7814 0.66 0.990451
Target:  5'- aGACGGcuacgggcccaaAAGCCCGug-GUCGcAGcGACa -3'
miRNA:   3'- gCUGCU------------UUCGGGCuaaUAGC-UCuUUG- -5'
28041 3' -46.5 NC_005887.1 + 30947 0.66 0.988931
Target:  5'- uCGGCGGugaugucggcGCCCGcgUAcgUGAGGAACu -3'
miRNA:   3'- -GCUGCUuu--------CGGGCuaAUa-GCUCUUUG- -5'
28041 3' -46.5 NC_005887.1 + 14723 0.66 0.98723
Target:  5'- gCGGCGAucGCgcaggCGAcgAUCGAGAAAg -3'
miRNA:   3'- -GCUGCUuuCGg----GCUaaUAGCUCUUUg -5'
28041 3' -46.5 NC_005887.1 + 27792 0.66 0.985335
Target:  5'- aUGACGAcGGCgCCGAcgcaggCGAGGGAa -3'
miRNA:   3'- -GCUGCUuUCG-GGCUaaua--GCUCUUUg -5'
28041 3' -46.5 NC_005887.1 + 19184 0.66 0.985134
Target:  5'- gCGACGAgaaaggcAAGCCacacaCGGggGUCGAGGAu- -3'
miRNA:   3'- -GCUGCU-------UUCGG-----GCUaaUAGCUCUUug -5'
28041 3' -46.5 NC_005887.1 + 11826 0.66 0.983231
Target:  5'- aGGCGgcGGCCUG-UUcUCGAGcAGCa -3'
miRNA:   3'- gCUGCuuUCGGGCuAAuAGCUCuUUG- -5'
28041 3' -46.5 NC_005887.1 + 3705 0.67 0.978351
Target:  5'- uCGACGAGaacgacGGCCCGAUguuguucgCGuuGAACc -3'
miRNA:   3'- -GCUGCUU------UCGGGCUAaua-----GCucUUUG- -5'
28041 3' -46.5 NC_005887.1 + 35807 0.67 0.978351
Target:  5'- gCGGCGAcAGCCCcGUgaauUCGgcGGggGCg -3'
miRNA:   3'- -GCUGCUuUCGGGcUAau--AGC--UCuuUG- -5'
28041 3' -46.5 NC_005887.1 + 8372 0.67 0.97496
Target:  5'- -uGCGAAAGCCUGAcgcagagcgCGAcGAAGCg -3'
miRNA:   3'- gcUGCUUUCGGGCUaaua-----GCU-CUUUG- -5'
28041 3' -46.5 NC_005887.1 + 25764 0.67 0.970533
Target:  5'- uGGCGAuuugcaguugcuugcGGGCCCGG---UCGAGAucGGCu -3'
miRNA:   3'- gCUGCU---------------UUCGGGCUaauAGCUCU--UUG- -5'
28041 3' -46.5 NC_005887.1 + 11928 0.68 0.965571
Target:  5'- cCGACGucGGCCUGAUgg-UGGGcGAACu -3'
miRNA:   3'- -GCUGCuuUCGGGCUAauaGCUC-UUUG- -5'
28041 3' -46.5 NC_005887.1 + 5072 0.68 0.961685
Target:  5'- gCGACGAcuGCaCCGAcuccCGAGAAAUc -3'
miRNA:   3'- -GCUGCUuuCG-GGCUaauaGCUCUUUG- -5'
28041 3' -46.5 NC_005887.1 + 9321 0.68 0.961685
Target:  5'- cCGACGcacacGUCCGGUaGUCGAuGGGACg -3'
miRNA:   3'- -GCUGCuuu--CGGGCUAaUAGCU-CUUUG- -5'
28041 3' -46.5 NC_005887.1 + 15613 0.68 0.953024
Target:  5'- gGACGAGccgaucgugcGCCCGGUcuaUGUCGAGcuGCc -3'
miRNA:   3'- gCUGCUUu---------CGGGCUA---AUAGCUCuuUG- -5'
28041 3' -46.5 NC_005887.1 + 3782 0.68 0.953024
Target:  5'- uCGACGAGGGCCgCGAccgcAUCGuGcaGAACa -3'
miRNA:   3'- -GCUGCUUUCGG-GCUaa--UAGCuC--UUUG- -5'
28041 3' -46.5 NC_005887.1 + 2184 0.69 0.943133
Target:  5'- uGACGccGGCCgCGGUgAUCGGGcAGCg -3'
miRNA:   3'- gCUGCuuUCGG-GCUAaUAGCUCuUUG- -5'
28041 3' -46.5 NC_005887.1 + 38515 0.69 0.937715
Target:  5'- cCGACGuAGAagcGCCCGAUUGcgaaCGGGAAGg -3'
miRNA:   3'- -GCUGC-UUU---CGGGCUAAUa---GCUCUUUg -5'
28041 3' -46.5 NC_005887.1 + 29212 0.69 0.937715
Target:  5'- gCGACGAgacgAGGCCCGGcacgcUCGAGGu-- -3'
miRNA:   3'- -GCUGCU----UUCGGGCUaau--AGCUCUuug -5'
28041 3' -46.5 NC_005887.1 + 4546 0.69 0.937715
Target:  5'- aGGCGAuGAGCaCCGA----CGAGGAACu -3'
miRNA:   3'- gCUGCU-UUCG-GGCUaauaGCUCUUUG- -5'
28041 3' -46.5 NC_005887.1 + 41683 0.69 0.925919
Target:  5'- gGACGAAGGUagCGAgcugcgCGAGggGCu -3'
miRNA:   3'- gCUGCUUUCGg-GCUaaua--GCUCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.