Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28041 | 3' | -46.5 | NC_005887.1 | + | 2184 | 0.69 | 0.943133 |
Target: 5'- uGACGccGGCCgCGGUgAUCGGGcAGCg -3' miRNA: 3'- gCUGCuuUCGG-GCUAaUAGCUCuUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 3782 | 0.68 | 0.953024 |
Target: 5'- uCGACGAGGGCCgCGAccgcAUCGuGcaGAACa -3' miRNA: 3'- -GCUGCUUUCGG-GCUaa--UAGCuC--UUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 9321 | 0.68 | 0.961685 |
Target: 5'- cCGACGcacacGUCCGGUaGUCGAuGGGACg -3' miRNA: 3'- -GCUGCuuu--CGGGCUAaUAGCU-CUUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 8372 | 0.67 | 0.97496 |
Target: 5'- -uGCGAAAGCCUGAcgcagagcgCGAcGAAGCg -3' miRNA: 3'- gcUGCUUUCGGGCUaaua-----GCU-CUUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 11826 | 0.66 | 0.983231 |
Target: 5'- aGGCGgcGGCCUG-UUcUCGAGcAGCa -3' miRNA: 3'- gCUGCuuUCGGGCuAAuAGCUCuUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 27792 | 0.66 | 0.985335 |
Target: 5'- aUGACGAcGGCgCCGAcgcaggCGAGGGAa -3' miRNA: 3'- -GCUGCUuUCG-GGCUaaua--GCUCUUUg -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 14723 | 0.66 | 0.98723 |
Target: 5'- gCGGCGAucGCgcaggCGAcgAUCGAGAAAg -3' miRNA: 3'- -GCUGCUuuCGg----GCUaaUAGCUCUUUg -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 30947 | 0.66 | 0.988931 |
Target: 5'- uCGGCGGugaugucggcGCCCGcgUAcgUGAGGAACu -3' miRNA: 3'- -GCUGCUuu--------CGGGCuaAUa-GCUCUUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 7814 | 0.66 | 0.990451 |
Target: 5'- aGACGGcuacgggcccaaAAGCCCGug-GUCGcAGcGACa -3' miRNA: 3'- gCUGCU------------UUCGGGCuaaUAGC-UCuUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 40471 | 0.7 | 0.912839 |
Target: 5'- cCGGCGucgacGAGCUCGAUUA-CGAGGcguGGCg -3' miRNA: 3'- -GCUGCu----UUCGGGCUAAUaGCUCU---UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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