miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 9628 0.66 0.895192
Target:  5'- -uGCgCGACCGGUGGCu--CGCGaugUCGg -3'
miRNA:   3'- ggUG-GUUGGCCACUGcuuGUGCa--AGC- -5'
28041 5' -51.4 NC_005887.1 + 16152 0.66 0.895192
Target:  5'- aCCACCGgcgcGCCGaGUGcGCGAGCGa--UCGa -3'
miRNA:   3'- -GGUGGU----UGGC-CAC-UGCUUGUgcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 21941 0.66 0.887804
Target:  5'- uCUGCCaAGCCGGUuuggaACGAGCACGa--- -3'
miRNA:   3'- -GGUGG-UUGGCCAc----UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 33939 0.66 0.887804
Target:  5'- cCUGCCGACgGcGcucGGCGAGCACGUcgCGu -3'
miRNA:   3'- -GGUGGUUGgC-Ca--CUGCUUGUGCAa-GC- -5'
28041 5' -51.4 NC_005887.1 + 18790 0.66 0.887804
Target:  5'- aCUGCCGGCCGGcGAUGcGgGCGgcgUCa -3'
miRNA:   3'- -GGUGGUUGGCCaCUGCuUgUGCa--AGc -5'
28041 5' -51.4 NC_005887.1 + 41625 0.66 0.887804
Target:  5'- gCACCGguGCUGGU-ACGAgaucaGCugGUUCa -3'
miRNA:   3'- gGUGGU--UGGCCAcUGCU-----UGugCAAGc -5'
28041 5' -51.4 NC_005887.1 + 40779 0.66 0.88705
Target:  5'- gCCGCCgAGCCGGcggucgagguucgUGGCGGcgACGCGccgcUCGa -3'
miRNA:   3'- -GGUGG-UUGGCC-------------ACUGCU--UGUGCa---AGC- -5'
28041 5' -51.4 NC_005887.1 + 1817 0.66 0.880142
Target:  5'- gCCGCCGACCuGGUacggcaucuucGGCG-ACACGaaCGc -3'
miRNA:   3'- -GGUGGUUGG-CCA-----------CUGCuUGUGCaaGC- -5'
28041 5' -51.4 NC_005887.1 + 6324 0.66 0.872212
Target:  5'- cUCGCCGGCgccgaGGUGACGcuGCugGUUg- -3'
miRNA:   3'- -GGUGGUUGg----CCACUGCu-UGugCAAgc -5'
28041 5' -51.4 NC_005887.1 + 11093 0.66 0.872212
Target:  5'- gCgGCCGacgaguACUGGUGGCaGAacggugGCAUGUUCGa -3'
miRNA:   3'- -GgUGGU------UGGCCACUG-CU------UGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 21019 0.66 0.872212
Target:  5'- cCCGCCGGcucaacguCCGGUcaGGCGAucgucucgACAgGUUCGu -3'
miRNA:   3'- -GGUGGUU--------GGCCA--CUGCU--------UGUgCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 20963 0.66 0.872212
Target:  5'- -uGCCGG-CGGUGcaGCGAAaauCGCGUUCGu -3'
miRNA:   3'- ggUGGUUgGCCAC--UGCUU---GUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 39396 0.66 0.86402
Target:  5'- gCgGCgCAACCguGGUcGCGAcCGCGUUCGg -3'
miRNA:   3'- -GgUG-GUUGG--CCAcUGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 34049 0.66 0.863187
Target:  5'- uCCAUCGcguucggAUCGGUGACGcgcuuCGCGUaUCGg -3'
miRNA:   3'- -GGUGGU-------UGGCCACUGCuu---GUGCA-AGC- -5'
28041 5' -51.4 NC_005887.1 + 27659 0.67 0.855575
Target:  5'- cCCGCCcGCCGc-GACGAGCcCGaUCGu -3'
miRNA:   3'- -GGUGGuUGGCcaCUGCUUGuGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 1993 0.67 0.855575
Target:  5'- aCCuCCGGCCGGcuacuACGAGCGCGg--- -3'
miRNA:   3'- -GGuGGUUGGCCac---UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 10903 0.67 0.846884
Target:  5'- aCCugCAGCCGGcgcaGAugACG-UCGg -3'
miRNA:   3'- -GGugGUUGGCCacugCUugUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 28572 0.67 0.846884
Target:  5'- gUCGCCGcCCGcUGcGCGGACGCGgUCGa -3'
miRNA:   3'- -GGUGGUuGGCcAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 12915 0.67 0.828802
Target:  5'- gCCAgCAcGCCGGUuucGCGAGCGCGUc-- -3'
miRNA:   3'- -GGUgGU-UGGCCAc--UGCUUGUGCAagc -5'
28041 5' -51.4 NC_005887.1 + 16239 0.67 0.828802
Target:  5'- aCGCCGGCCGGcGAgcgcaCGGGCACcgUCGc -3'
miRNA:   3'- gGUGGUUGGCCaCU-----GCUUGUGcaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.