miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 19890 1.11 0.001724
Target:  5'- cCCACCAACCGGUGACGAACACGUUCGu -3'
miRNA:   3'- -GGUGGUUGGCCACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 19514 0.74 0.463246
Target:  5'- gUACCGagaucuGCCGGU--UGAGCACGUUCGg -3'
miRNA:   3'- gGUGGU------UGGCCAcuGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 14825 0.74 0.473545
Target:  5'- gCCGCgAcGCUGaUGGCGGGCACGUUCGc -3'
miRNA:   3'- -GGUGgU-UGGCcACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 32528 0.73 0.483959
Target:  5'- gCGCUGACCGGcuGCGA-CGCGUUCGc -3'
miRNA:   3'- gGUGGUUGGCCacUGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 21337 0.73 0.483959
Target:  5'- gCAUCGGCCGGU-ACGAACACGa--- -3'
miRNA:   3'- gGUGGUUGGCCAcUGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 42064 0.73 0.505106
Target:  5'- cUCGCCGACUGGaucGACGAGCGCugUCGc -3'
miRNA:   3'- -GGUGGUUGGCCa--CUGCUUGUGcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 23570 0.72 0.548511
Target:  5'- aUCGCCGGCCGGcaguGCGAACGCGa--- -3'
miRNA:   3'- -GGUGGUUGGCCac--UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 38560 0.72 0.559553
Target:  5'- gCCACUGGCCGGUGAC-AACACc---- -3'
miRNA:   3'- -GGUGGUUGGCCACUGcUUGUGcaagc -5'
28041 5' -51.4 NC_005887.1 + 40782 0.71 0.593014
Target:  5'- cCCACCGGCCcaGGUcGcCGAACAUG-UCGa -3'
miRNA:   3'- -GGUGGUUGG--CCA-CuGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 39490 0.71 0.604248
Target:  5'- gCCGCUGGCCaGGcUGACGAACugGaagUUCa -3'
miRNA:   3'- -GGUGGUUGG-CC-ACUGCUUGugC---AAGc -5'
28041 5' -51.4 NC_005887.1 + 9895 0.71 0.626784
Target:  5'- --uCCAGCCGGUGcaggucggcggcACGAuCAUGUUCGu -3'
miRNA:   3'- gguGGUUGGCCAC------------UGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 12151 0.71 0.638065
Target:  5'- gCGCCAgAUUGGUGACGAuCGCGUg-- -3'
miRNA:   3'- gGUGGU-UGGCCACUGCUuGUGCAagc -5'
28041 5' -51.4 NC_005887.1 + 27854 0.7 0.660597
Target:  5'- aCCACCAagcACCGc-GGCGGGCACGaUCu -3'
miRNA:   3'- -GGUGGU---UGGCcaCUGCUUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 30008 0.7 0.660597
Target:  5'- aCCGCCuGGCCGGcgagcGACGuACGCaGUUCGc -3'
miRNA:   3'- -GGUGG-UUGGCCa----CUGCuUGUG-CAAGC- -5'
28041 5' -51.4 NC_005887.1 + 12313 0.7 0.683018
Target:  5'- gCGCUcGCCuaugagGGUGGCGucgGCGCGUUCGu -3'
miRNA:   3'- gGUGGuUGG------CCACUGCu--UGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 6286 0.69 0.716237
Target:  5'- aCAUCGACgGcGUGcGCGAGCGCG-UCGa -3'
miRNA:   3'- gGUGGUUGgC-CAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 24952 0.69 0.727152
Target:  5'- gCCGCCGAC--GUGAuCGAccaGCGCGUUCa -3'
miRNA:   3'- -GGUGGUUGgcCACU-GCU---UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 27982 0.69 0.737967
Target:  5'- gCCGCCGGCuCGG-GcCGAAuCGCGUcgUCGg -3'
miRNA:   3'- -GGUGGUUG-GCCaCuGCUU-GUGCA--AGC- -5'
28041 5' -51.4 NC_005887.1 + 4620 0.69 0.74867
Target:  5'- cUCGCCGcggcGCCGGUGGCcgccGGCGCGaUCa -3'
miRNA:   3'- -GGUGGU----UGGCCACUGc---UUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 22675 0.69 0.74867
Target:  5'- gCAUCGGCCGGUGgGCGcAACcguguuGCGUUCc -3'
miRNA:   3'- gGUGGUUGGCCAC-UGC-UUG------UGCAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.