miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 22675 0.69 0.74867
Target:  5'- gCAUCGGCCGGUGgGCGcAACcguguuGCGUUCc -3'
miRNA:   3'- gGUGGUUGGCCAC-UGC-UUG------UGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 4620 0.69 0.74867
Target:  5'- cUCGCCGcggcGCCGGUGGCcgccGGCGCGaUCa -3'
miRNA:   3'- -GGUGGU----UGGCCACUGc---UUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 6526 0.68 0.769691
Target:  5'- aCGCCGACgCGGcGcACGAggaacacaGCGCGUUCu -3'
miRNA:   3'- gGUGGUUG-GCCaC-UGCU--------UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 3800 0.68 0.779984
Target:  5'- gUCACCGGCCaGUGGCGcccGCugGUguaagCGc -3'
miRNA:   3'- -GGUGGUUGGcCACUGCu--UGugCAa----GC- -5'
28041 5' -51.4 NC_005887.1 + 22470 0.68 0.779984
Target:  5'- gUCACCGGuuGGUG--GGGCACGcUCGg -3'
miRNA:   3'- -GGUGGUUggCCACugCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 17568 0.68 0.779984
Target:  5'- aCUACgUGACCGGcgcGACGAACACGcccgUCa -3'
miRNA:   3'- -GGUG-GUUGGCCa--CUGCUUGUGCa---AGc -5'
28041 5' -51.4 NC_005887.1 + 28166 0.68 0.779984
Target:  5'- aCGCCGACUGGUcGuCGAGCAacaUCGg -3'
miRNA:   3'- gGUGGUUGGCCA-CuGCUUGUgcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 34798 0.68 0.789111
Target:  5'- gCCACgaGGCCGGauccUGAUcggucagGAACGCGUUCa -3'
miRNA:   3'- -GGUGg-UUGGCC----ACUG-------CUUGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 32424 0.68 0.790116
Target:  5'- gCUugCGGCCGGccuucUGcACGAACAUGaUCGu -3'
miRNA:   3'- -GGugGUUGGCC-----AC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 23767 0.68 0.800076
Target:  5'- uCgGCCGACUGGaacgccgcGACGAGCAUG-UCGc -3'
miRNA:   3'- -GgUGGUUGGCCa-------CUGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 24760 0.68 0.800076
Target:  5'- gCGCgAGCgCGGgauUGACGGGCGUGUUCGu -3'
miRNA:   3'- gGUGgUUG-GCC---ACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 16012 0.68 0.800076
Target:  5'- gCCGCgAGCCGGUGACGuauCGgGa--- -3'
miRNA:   3'- -GGUGgUUGGCCACUGCuu-GUgCaagc -5'
28041 5' -51.4 NC_005887.1 + 36047 0.68 0.804008
Target:  5'- gCGCCAcgucggugugggcagACCGGUG-CGAACcgACGUgCGg -3'
miRNA:   3'- gGUGGU---------------UGGCCACuGCUUG--UGCAaGC- -5'
28041 5' -51.4 NC_005887.1 + 15593 0.68 0.809851
Target:  5'- cCgGCCGACUGGUucgaccugGACGAGC-CGaUCGu -3'
miRNA:   3'- -GgUGGUUGGCCA--------CUGCUUGuGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 4024 0.68 0.809851
Target:  5'- cCCACCAccuuccugaGCCGGUGAUcGACaACGgcgaCGg -3'
miRNA:   3'- -GGUGGU---------UGGCCACUGcUUG-UGCaa--GC- -5'
28041 5' -51.4 NC_005887.1 + 16239 0.67 0.828802
Target:  5'- aCGCCGGCCGGcGAgcgcaCGGGCACcgUCGc -3'
miRNA:   3'- gGUGGUUGGCCaCU-----GCUUGUGcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 12915 0.67 0.828802
Target:  5'- gCCAgCAcGCCGGUuucGCGAGCGCGUc-- -3'
miRNA:   3'- -GGUgGU-UGGCCAc--UGCUUGUGCAagc -5'
28041 5' -51.4 NC_005887.1 + 28572 0.67 0.846884
Target:  5'- gUCGCCGcCCGcUGcGCGGACGCGgUCGa -3'
miRNA:   3'- -GGUGGUuGGCcAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 10903 0.67 0.846884
Target:  5'- aCCugCAGCCGGcgcaGAugACG-UCGg -3'
miRNA:   3'- -GGugGUUGGCCacugCUugUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 1993 0.67 0.855575
Target:  5'- aCCuCCGGCCGGcuacuACGAGCGCGg--- -3'
miRNA:   3'- -GGuGGUUGGCCac---UGCUUGUGCaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.