Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28041 | 5' | -51.4 | NC_005887.1 | + | 38560 | 0.72 | 0.559553 |
Target: 5'- gCCACUGGCCGGUGAC-AACACc---- -3' miRNA: 3'- -GGUGGUUGGCCACUGcUUGUGcaagc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 39490 | 0.71 | 0.604248 |
Target: 5'- gCCGCUGGCCaGGcUGACGAACugGaagUUCa -3' miRNA: 3'- -GGUGGUUGG-CC-ACUGCUUGugC---AAGc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 9895 | 0.71 | 0.626784 |
Target: 5'- --uCCAGCCGGUGcaggucggcggcACGAuCAUGUUCGu -3' miRNA: 3'- gguGGUUGGCCAC------------UGCUuGUGCAAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 12151 | 0.71 | 0.638065 |
Target: 5'- gCGCCAgAUUGGUGACGAuCGCGUg-- -3' miRNA: 3'- gGUGGU-UGGCCACUGCUuGUGCAagc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 22470 | 0.68 | 0.779984 |
Target: 5'- gUCACCGGuuGGUG--GGGCACGcUCGg -3' miRNA: 3'- -GGUGGUUggCCACugCUUGUGCaAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 4620 | 0.69 | 0.74867 |
Target: 5'- cUCGCCGcggcGCCGGUGGCcgccGGCGCGaUCa -3' miRNA: 3'- -GGUGGU----UGGCCACUGc---UUGUGCaAGc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 25539 | 0.69 | 0.74867 |
Target: 5'- gCCGCCGAgCGGU-----GCGCGUUCGu -3' miRNA: 3'- -GGUGGUUgGCCAcugcuUGUGCAAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 22675 | 0.69 | 0.74867 |
Target: 5'- gCAUCGGCCGGUGgGCGcAACcguguuGCGUUCc -3' miRNA: 3'- gGUGGUUGGCCAC-UGC-UUG------UGCAAGc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 27982 | 0.69 | 0.737967 |
Target: 5'- gCCGCCGGCuCGG-GcCGAAuCGCGUcgUCGg -3' miRNA: 3'- -GGUGGUUG-GCCaCuGCUU-GUGCA--AGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 24760 | 0.68 | 0.800076 |
Target: 5'- gCGCgAGCgCGGgauUGACGGGCGUGUUCGu -3' miRNA: 3'- gGUGgUUG-GCC---ACUGCUUGUGCAAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 36047 | 0.68 | 0.804008 |
Target: 5'- gCGCCAcgucggugugggcagACCGGUG-CGAACcgACGUgCGg -3' miRNA: 3'- gGUGGU---------------UGGCCACuGCUUG--UGCAaGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 4024 | 0.68 | 0.809851 |
Target: 5'- cCCACCAccuuccugaGCCGGUGAUcGACaACGgcgaCGg -3' miRNA: 3'- -GGUGGU---------UGGCCACUGcUUG-UGCaa--GC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 15593 | 0.68 | 0.809851 |
Target: 5'- cCgGCCGACUGGUucgaccugGACGAGC-CGaUCGu -3' miRNA: 3'- -GgUGGUUGGCCA--------CUGCUUGuGCaAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 27659 | 0.67 | 0.855575 |
Target: 5'- cCCGCCcGCCGc-GACGAGCcCGaUCGu -3' miRNA: 3'- -GGUGGuUGGCcaCUGCUUGuGCaAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 34049 | 0.66 | 0.863187 |
Target: 5'- uCCAUCGcguucggAUCGGUGACGcgcuuCGCGUaUCGg -3' miRNA: 3'- -GGUGGU-------UGGCCACUGCuu---GUGCA-AGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 6324 | 0.66 | 0.872212 |
Target: 5'- cUCGCCGGCgccgaGGUGACGcuGCugGUUg- -3' miRNA: 3'- -GGUGGUUGg----CCACUGCu-UGugCAAgc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 20963 | 0.66 | 0.872212 |
Target: 5'- -uGCCGG-CGGUGcaGCGAAaauCGCGUUCGu -3' miRNA: 3'- ggUGGUUgGCCAC--UGCUU---GUGCAAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 11093 | 0.66 | 0.872212 |
Target: 5'- gCgGCCGacgaguACUGGUGGCaGAacggugGCAUGUUCGa -3' miRNA: 3'- -GgUGGU------UGGCCACUG-CU------UGUGCAAGC- -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 18790 | 0.66 | 0.887804 |
Target: 5'- aCUGCCGGCCGGcGAUGcGgGCGgcgUCa -3' miRNA: 3'- -GGUGGUUGGCCaCUGCuUgUGCa--AGc -5' |
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28041 | 5' | -51.4 | NC_005887.1 | + | 19890 | 1.11 | 0.001724 |
Target: 5'- cCCACCAACCGGUGACGAACACGUUCGu -3' miRNA: 3'- -GGUGGUUGGCCACUGCUUGUGCAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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