miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 17568 0.68 0.779984
Target:  5'- aCUACgUGACCGGcgcGACGAACACGcccgUCa -3'
miRNA:   3'- -GGUG-GUUGGCCa--CUGCUUGUGCa---AGc -5'
28041 5' -51.4 NC_005887.1 + 18790 0.66 0.887804
Target:  5'- aCUGCCGGCCGGcGAUGcGgGCGgcgUCa -3'
miRNA:   3'- -GGUGGUUGGCCaCUGCuUgUGCa--AGc -5'
28041 5' -51.4 NC_005887.1 + 19514 0.74 0.463246
Target:  5'- gUACCGagaucuGCCGGU--UGAGCACGUUCGg -3'
miRNA:   3'- gGUGGU------UGGCCAcuGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 19890 1.11 0.001724
Target:  5'- cCCACCAACCGGUGACGAACACGUUCGu -3'
miRNA:   3'- -GGUGGUUGGCCACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 20963 0.66 0.872212
Target:  5'- -uGCCGG-CGGUGcaGCGAAaauCGCGUUCGu -3'
miRNA:   3'- ggUGGUUgGCCAC--UGCUU---GUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 21019 0.66 0.872212
Target:  5'- cCCGCCGGcucaacguCCGGUcaGGCGAucgucucgACAgGUUCGu -3'
miRNA:   3'- -GGUGGUU--------GGCCA--CUGCU--------UGUgCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 21337 0.73 0.483959
Target:  5'- gCAUCGGCCGGU-ACGAACACGa--- -3'
miRNA:   3'- gGUGGUUGGCCAcUGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 21941 0.66 0.887804
Target:  5'- uCUGCCaAGCCGGUuuggaACGAGCACGa--- -3'
miRNA:   3'- -GGUGG-UUGGCCAc----UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 22470 0.68 0.779984
Target:  5'- gUCACCGGuuGGUG--GGGCACGcUCGg -3'
miRNA:   3'- -GGUGGUUggCCACugCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 22675 0.69 0.74867
Target:  5'- gCAUCGGCCGGUGgGCGcAACcguguuGCGUUCc -3'
miRNA:   3'- gGUGGUUGGCCAC-UGC-UUG------UGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 23570 0.72 0.548511
Target:  5'- aUCGCCGGCCGGcaguGCGAACGCGa--- -3'
miRNA:   3'- -GGUGGUUGGCCac--UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 23767 0.68 0.800076
Target:  5'- uCgGCCGACUGGaacgccgcGACGAGCAUG-UCGc -3'
miRNA:   3'- -GgUGGUUGGCCa-------CUGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 24760 0.68 0.800076
Target:  5'- gCGCgAGCgCGGgauUGACGGGCGUGUUCGu -3'
miRNA:   3'- gGUGgUUG-GCC---ACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 24952 0.69 0.727152
Target:  5'- gCCGCCGAC--GUGAuCGAccaGCGCGUUCa -3'
miRNA:   3'- -GGUGGUUGgcCACU-GCU---UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 25539 0.69 0.74867
Target:  5'- gCCGCCGAgCGGU-----GCGCGUUCGu -3'
miRNA:   3'- -GGUGGUUgGCCAcugcuUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 25827 0.69 0.74867
Target:  5'- cCCACuCGgcGCCGGcGGCG-ACGCGaUCGg -3'
miRNA:   3'- -GGUG-GU--UGGCCaCUGCuUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 27659 0.67 0.855575
Target:  5'- cCCGCCcGCCGc-GACGAGCcCGaUCGu -3'
miRNA:   3'- -GGUGGuUGGCcaCUGCUUGuGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 27854 0.7 0.660597
Target:  5'- aCCACCAagcACCGc-GGCGGGCACGaUCu -3'
miRNA:   3'- -GGUGGU---UGGCcaCUGCUUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 27982 0.69 0.737967
Target:  5'- gCCGCCGGCuCGG-GcCGAAuCGCGUcgUCGg -3'
miRNA:   3'- -GGUGGUUG-GCCaCuGCUU-GUGCA--AGC- -5'
28041 5' -51.4 NC_005887.1 + 28166 0.68 0.779984
Target:  5'- aCGCCGACUGGUcGuCGAGCAacaUCGg -3'
miRNA:   3'- gGUGGUUGGCCA-CuGCUUGUgcaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.