miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 42064 0.73 0.505106
Target:  5'- cUCGCCGACUGGaucGACGAGCGCugUCGc -3'
miRNA:   3'- -GGUGGUUGGCCa--CUGCUUGUGcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 41625 0.66 0.887804
Target:  5'- gCACCGguGCUGGU-ACGAgaucaGCugGUUCa -3'
miRNA:   3'- gGUGGU--UGGCCAcUGCU-----UGugCAAGc -5'
28041 5' -51.4 NC_005887.1 + 40782 0.71 0.593014
Target:  5'- cCCACCGGCCcaGGUcGcCGAACAUG-UCGa -3'
miRNA:   3'- -GGUGGUUGG--CCA-CuGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 40779 0.66 0.88705
Target:  5'- gCCGCCgAGCCGGcggucgagguucgUGGCGGcgACGCGccgcUCGa -3'
miRNA:   3'- -GGUGG-UUGGCC-------------ACUGCU--UGUGCa---AGC- -5'
28041 5' -51.4 NC_005887.1 + 39490 0.71 0.604248
Target:  5'- gCCGCUGGCCaGGcUGACGAACugGaagUUCa -3'
miRNA:   3'- -GGUGGUUGG-CC-ACUGCUUGugC---AAGc -5'
28041 5' -51.4 NC_005887.1 + 39396 0.66 0.86402
Target:  5'- gCgGCgCAACCguGGUcGCGAcCGCGUUCGg -3'
miRNA:   3'- -GgUG-GUUGG--CCAcUGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 38560 0.72 0.559553
Target:  5'- gCCACUGGCCGGUGAC-AACACc---- -3'
miRNA:   3'- -GGUGGUUGGCCACUGcUUGUGcaagc -5'
28041 5' -51.4 NC_005887.1 + 36047 0.68 0.804008
Target:  5'- gCGCCAcgucggugugggcagACCGGUG-CGAACcgACGUgCGg -3'
miRNA:   3'- gGUGGU---------------UGGCCACuGCUUG--UGCAaGC- -5'
28041 5' -51.4 NC_005887.1 + 34798 0.68 0.789111
Target:  5'- gCCACgaGGCCGGauccUGAUcggucagGAACGCGUUCa -3'
miRNA:   3'- -GGUGg-UUGGCC----ACUG-------CUUGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 34049 0.66 0.863187
Target:  5'- uCCAUCGcguucggAUCGGUGACGcgcuuCGCGUaUCGg -3'
miRNA:   3'- -GGUGGU-------UGGCCACUGCuu---GUGCA-AGC- -5'
28041 5' -51.4 NC_005887.1 + 33939 0.66 0.887804
Target:  5'- cCUGCCGACgGcGcucGGCGAGCACGUcgCGu -3'
miRNA:   3'- -GGUGGUUGgC-Ca--CUGCUUGUGCAa-GC- -5'
28041 5' -51.4 NC_005887.1 + 32528 0.73 0.483959
Target:  5'- gCGCUGACCGGcuGCGA-CGCGUUCGc -3'
miRNA:   3'- gGUGGUUGGCCacUGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 32424 0.68 0.790116
Target:  5'- gCUugCGGCCGGccuucUGcACGAACAUGaUCGu -3'
miRNA:   3'- -GGugGUUGGCC-----AC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 30008 0.7 0.660597
Target:  5'- aCCGCCuGGCCGGcgagcGACGuACGCaGUUCGc -3'
miRNA:   3'- -GGUGG-UUGGCCa----CUGCuUGUG-CAAGC- -5'
28041 5' -51.4 NC_005887.1 + 28572 0.67 0.846884
Target:  5'- gUCGCCGcCCGcUGcGCGGACGCGgUCGa -3'
miRNA:   3'- -GGUGGUuGGCcAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 28166 0.68 0.779984
Target:  5'- aCGCCGACUGGUcGuCGAGCAacaUCGg -3'
miRNA:   3'- gGUGGUUGGCCA-CuGCUUGUgcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 27982 0.69 0.737967
Target:  5'- gCCGCCGGCuCGG-GcCGAAuCGCGUcgUCGg -3'
miRNA:   3'- -GGUGGUUG-GCCaCuGCUU-GUGCA--AGC- -5'
28041 5' -51.4 NC_005887.1 + 27854 0.7 0.660597
Target:  5'- aCCACCAagcACCGc-GGCGGGCACGaUCu -3'
miRNA:   3'- -GGUGGU---UGGCcaCUGCUUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 27659 0.67 0.855575
Target:  5'- cCCGCCcGCCGc-GACGAGCcCGaUCGu -3'
miRNA:   3'- -GGUGGuUGGCcaCUGCUUGuGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 25827 0.69 0.74867
Target:  5'- cCCACuCGgcGCCGGcGGCG-ACGCGaUCGg -3'
miRNA:   3'- -GGUG-GU--UGGCCaCUGCuUGUGCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.