miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 41625 0.66 0.887804
Target:  5'- gCACCGguGCUGGU-ACGAgaucaGCugGUUCa -3'
miRNA:   3'- gGUGGU--UGGCCAcUGCU-----UGugCAAGc -5'
28041 5' -51.4 NC_005887.1 + 24952 0.69 0.727152
Target:  5'- gCCGCCGAC--GUGAuCGAccaGCGCGUUCa -3'
miRNA:   3'- -GGUGGUUGgcCACU-GCU---UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 12313 0.7 0.683018
Target:  5'- gCGCUcGCCuaugagGGUGGCGucgGCGCGUUCGu -3'
miRNA:   3'- gGUGGuUGG------CCACUGCu--UGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 19890 1.11 0.001724
Target:  5'- cCCACCAACCGGUGACGAACACGUUCGu -3'
miRNA:   3'- -GGUGGUUGGCCACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 6324 0.66 0.872212
Target:  5'- cUCGCCGGCgccgaGGUGACGcuGCugGUUg- -3'
miRNA:   3'- -GGUGGUUGg----CCACUGCu-UGugCAAgc -5'
28041 5' -51.4 NC_005887.1 + 34049 0.66 0.863187
Target:  5'- uCCAUCGcguucggAUCGGUGACGcgcuuCGCGUaUCGg -3'
miRNA:   3'- -GGUGGU-------UGGCCACUGCuu---GUGCA-AGC- -5'
28041 5' -51.4 NC_005887.1 + 15593 0.68 0.809851
Target:  5'- cCgGCCGACUGGUucgaccugGACGAGC-CGaUCGu -3'
miRNA:   3'- -GgUGGUUGGCCA--------CUGCUUGuGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 4024 0.68 0.809851
Target:  5'- cCCACCAccuuccugaGCCGGUGAUcGACaACGgcgaCGg -3'
miRNA:   3'- -GGUGGU---------UGGCCACUGcUUG-UGCaa--GC- -5'
28041 5' -51.4 NC_005887.1 + 23767 0.68 0.800076
Target:  5'- uCgGCCGACUGGaacgccgcGACGAGCAUG-UCGc -3'
miRNA:   3'- -GgUGGUUGGCCa-------CUGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 25827 0.69 0.74867
Target:  5'- cCCACuCGgcGCCGGcGGCG-ACGCGaUCGg -3'
miRNA:   3'- -GGUG-GU--UGGCCaCUGCuUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 34798 0.68 0.789111
Target:  5'- gCCACgaGGCCGGauccUGAUcggucagGAACGCGUUCa -3'
miRNA:   3'- -GGUGg-UUGGCC----ACUG-------CUUGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 24760 0.68 0.800076
Target:  5'- gCGCgAGCgCGGgauUGACGGGCGUGUUCGu -3'
miRNA:   3'- gGUGgUUG-GCC---ACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 18790 0.66 0.887804
Target:  5'- aCUGCCGGCCGGcGAUGcGgGCGgcgUCa -3'
miRNA:   3'- -GGUGGUUGGCCaCUGCuUgUGCa--AGc -5'
28041 5' -51.4 NC_005887.1 + 3800 0.68 0.779984
Target:  5'- gUCACCGGCCaGUGGCGcccGCugGUguaagCGc -3'
miRNA:   3'- -GGUGGUUGGcCACUGCu--UGugCAa----GC- -5'
28041 5' -51.4 NC_005887.1 + 11093 0.66 0.872212
Target:  5'- gCgGCCGacgaguACUGGUGGCaGAacggugGCAUGUUCGa -3'
miRNA:   3'- -GgUGGU------UGGCCACUG-CU------UGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 36047 0.68 0.804008
Target:  5'- gCGCCAcgucggugugggcagACCGGUG-CGAACcgACGUgCGg -3'
miRNA:   3'- gGUGGU---------------UGGCCACuGCUUG--UGCAaGC- -5'
28041 5' -51.4 NC_005887.1 + 6526 0.68 0.769691
Target:  5'- aCGCCGACgCGGcGcACGAggaacacaGCGCGUUCu -3'
miRNA:   3'- gGUGGUUG-GCCaC-UGCU--------UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 6286 0.69 0.716237
Target:  5'- aCAUCGACgGcGUGcGCGAGCGCG-UCGa -3'
miRNA:   3'- gGUGGUUGgC-CAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 20963 0.66 0.872212
Target:  5'- -uGCCGG-CGGUGcaGCGAAaauCGCGUUCGu -3'
miRNA:   3'- ggUGGUUgGCCAC--UGCUU---GUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 27659 0.67 0.855575
Target:  5'- cCCGCCcGCCGc-GACGAGCcCGaUCGu -3'
miRNA:   3'- -GGUGGuUGGCcaCUGCUUGuGCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.