miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 3' -61.8 NC_005887.1 + 1578 0.67 0.257892
Target:  5'- cGAC-CGCCGgcucGGCgGC-GCgCGGCGCGc -3'
miRNA:   3'- -CUGaGCGGCa---CCGaCGaCG-GCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 2624 0.66 0.329818
Target:  5'- uACUCGCaCGUGGCcgagGCgagucaguaccUGCUggugGGCGCGg -3'
miRNA:   3'- cUGAGCG-GCACCGa---CG-----------ACGG----CCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 4307 0.71 0.144612
Target:  5'- -cCUCGCCGaGGCcggccaGCUGCCGGaCAUGc -3'
miRNA:   3'- cuGAGCGGCaCCGa-----CGACGGCC-GUGC- -5'
28045 3' -61.8 NC_005887.1 + 4618 0.8 0.030527
Target:  5'- uGCUCGCCGcGGCgccggugGCcGCCGGCGCGa -3'
miRNA:   3'- cUGAGCGGCaCCGa------CGaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 4884 0.68 0.215556
Target:  5'- cGCUCGCgaCGaUGGUcGCcgaggGCCGGCGCGa -3'
miRNA:   3'- cUGAGCG--GC-ACCGaCGa----CGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 7192 0.66 0.289978
Target:  5'- cGACUCGCuucucgaauucucgCGUGcGCaggcGCUGUCGGCGuCGg -3'
miRNA:   3'- -CUGAGCG--------------GCAC-CGa---CGACGGCCGU-GC- -5'
28045 3' -61.8 NC_005887.1 + 7679 0.68 0.217806
Target:  5'- uGCUCGacaaCGUGGCggauccggaaaccgGCaaGCCGGCGCGc -3'
miRNA:   3'- cUGAGCg---GCACCGa-------------CGa-CGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 8000 0.66 0.298657
Target:  5'- cGCUCgucuccaGCCGUGGCcgGC-GCCacGGCACa -3'
miRNA:   3'- cUGAG-------CGGCACCGa-CGaCGG--CCGUGc -5'
28045 3' -61.8 NC_005887.1 + 12147 0.67 0.271178
Target:  5'- cGACgCGgCGUGGCUG--GCCGGCGa- -3'
miRNA:   3'- -CUGaGCgGCACCGACgaCGGCCGUgc -5'
28045 3' -61.8 NC_005887.1 + 12314 0.66 0.329818
Target:  5'- cGCUCGCCuaugagGGUgGC-GUCGGCGCGu -3'
miRNA:   3'- cUGAGCGGca----CCGaCGaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 12534 0.72 0.120718
Target:  5'- aGCUCGCCGacaacuucaaggacgUGGCgucgacgGCcGCCGGCAUGc -3'
miRNA:   3'- cUGAGCGGC---------------ACCGa------CGaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 12604 0.69 0.198789
Target:  5'- aGCUCGCCG-GGCaagaccgUGCacGCgCGGCGCGu -3'
miRNA:   3'- cUGAGCGGCaCCG-------ACGa-CG-GCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 12868 0.71 0.148589
Target:  5'- aGGCaCGaCCGUGGCaGgUGCCGuGCGCGa -3'
miRNA:   3'- -CUGaGC-GGCACCGaCgACGGC-CGUGC- -5'
28045 3' -61.8 NC_005887.1 + 14613 0.68 0.232923
Target:  5'- cGGCcgucggCGCCGUcgagGGCgcgcucacgGCaGCCGGCGCGg -3'
miRNA:   3'- -CUGa-----GCGGCA----CCGa--------CGaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 14696 0.74 0.087905
Target:  5'- gGGCUCGUCGcGGCggGCggGCCGgGCGCGg -3'
miRNA:   3'- -CUGAGCGGCaCCGa-CGa-CGGC-CGUGC- -5'
28045 3' -61.8 NC_005887.1 + 15069 0.68 0.221218
Target:  5'- gGugUCGCCGaaGGgaGCcGCCGGCGu- -3'
miRNA:   3'- -CugAGCGGCa-CCgaCGaCGGCCGUgc -5'
28045 3' -61.8 NC_005887.1 + 17334 0.71 0.129658
Target:  5'- cGGCUgGCC--GGCgGCcGCCGGCGCGa -3'
miRNA:   3'- -CUGAgCGGcaCCGaCGaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 17637 0.67 0.257892
Target:  5'- cGACggucagCGCCGUGaa-GCUGCagGGCACGa -3'
miRNA:   3'- -CUGa-----GCGGCACcgaCGACGg-CCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 17671 0.67 0.271178
Target:  5'- -cCUCGCCGcgcuUGGCgac-GUCGGCACGa -3'
miRNA:   3'- cuGAGCGGC----ACCGacgaCGGCCGUGC- -5'
28045 3' -61.8 NC_005887.1 + 18097 1.08 0.000192
Target:  5'- cGACUCGCCGUGGCUGCUGCCGGCACGu -3'
miRNA:   3'- -CUGAGCGGCACCGACGACGGCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.