Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28045 | 3' | -61.8 | NC_005887.1 | + | 21809 | 0.66 | 0.329818 |
Target: 5'- cGACgu-CCGcGGC-GCUGCCgGGCGCGc -3' miRNA: 3'- -CUGagcGGCaCCGaCGACGG-CCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 22775 | 0.66 | 0.306788 |
Target: 5'- uGCUCGU--UGGCU-CgacGCCGGCGCGg -3' miRNA: 3'- cUGAGCGgcACCGAcGa--CGGCCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 26332 | 0.66 | 0.329818 |
Target: 5'- ----gGCCGUGGCcgGCgcugGCCGgguGCGCGa -3' miRNA: 3'- cugagCGGCACCGa-CGa---CGGC---CGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 28335 | 0.66 | 0.314325 |
Target: 5'- cGGCgCGCCGgcGGUUGCggaggcGCgCGGCGCa -3' miRNA: 3'- -CUGaGCGGCa-CCGACGa-----CG-GCCGUGc -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 29457 | 0.69 | 0.193628 |
Target: 5'- uGGCUCGCCGUGccgaucaGCUcGC-GCaCGGCACc -3' miRNA: 3'- -CUGAGCGGCAC-------CGA-CGaCG-GCCGUGc -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 30264 | 0.68 | 0.238968 |
Target: 5'- cGCUUGCCGUccGGC-GCgacgaucgUGCCGcGCACGa -3' miRNA: 3'- cUGAGCGGCA--CCGaCG--------ACGGC-CGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 30447 | 0.67 | 0.278024 |
Target: 5'- aGACgugagcccCGCCGUGaa-GUUGCCGGCGCu -3' miRNA: 3'- -CUGa-------GCGGCACcgaCGACGGCCGUGc -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 34291 | 0.69 | 0.179319 |
Target: 5'- --gUCGCCGUgcGGCUGaCUGCgGGCGg- -3' miRNA: 3'- cugAGCGGCA--CCGAC-GACGgCCGUgc -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 37765 | 0.68 | 0.221218 |
Target: 5'- aACUUGCCGUcGUcGUUGCgCGGCAUGg -3' miRNA: 3'- cUGAGCGGCAcCGaCGACG-GCCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 39163 | 0.67 | 0.257892 |
Target: 5'- -uCUCGCUGUccgggcgcGGCaGCUGCCcgaacuugucgaGGCGCGg -3' miRNA: 3'- cuGAGCGGCA--------CCGaCGACGG------------CCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 40159 | 0.72 | 0.126149 |
Target: 5'- cGCUCGCCGcgugUGaGCUGCgcgaCGGCACGa -3' miRNA: 3'- cUGAGCGGC----AC-CGACGacg-GCCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 41599 | 0.66 | 0.306788 |
Target: 5'- cGGCg-GCCcaGGUgcgGCgGCCGGCGCGg -3' miRNA: 3'- -CUGagCGGcaCCGa--CGaCGGCCGUGC- -5' |
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28045 | 3' | -61.8 | NC_005887.1 | + | 41957 | 0.68 | 0.227007 |
Target: 5'- uGCUCG-CGUGG-UGCgUGCgCGGCGCGc -3' miRNA: 3'- cUGAGCgGCACCgACG-ACG-GCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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