miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 11100 0.7 0.59262
Target:  5'- uGGCGCAUCGgcuggugcgcgcgaAGCuggccgaGGCgccgUGGCGGCGCa -3'
miRNA:   3'- -UCGCGUAGU--------------UUG-------CCGa---ACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 11895 0.66 0.788622
Target:  5'- cAGCGCcggCAAcuucACGGCggGGCu-CACGu -3'
miRNA:   3'- -UCGCGua-GUU----UGCCGaaCCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 12631 0.74 0.347393
Target:  5'- cGGCGCGUgAuccugcgacgcGACGGCgagUGGCuGCGCGu -3'
miRNA:   3'- -UCGCGUAgU-----------UUGCCGa--ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 13599 0.68 0.689707
Target:  5'- cGCGUAcuUCAucGCuGC-UGGCAGCGCGg -3'
miRNA:   3'- uCGCGU--AGUu-UGcCGaACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 13868 0.72 0.446973
Target:  5'- cGCGCGUCuacuucgucgagcugAAGCGGCccGGCAACAa- -3'
miRNA:   3'- uCGCGUAG---------------UUUGCCGaaCCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 14195 0.68 0.712458
Target:  5'- cGCGCuGUCGGgcGCGGCcucggacagGGCGGCGCc -3'
miRNA:   3'- uCGCG-UAGUU--UGCCGaa-------CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 14545 0.71 0.540124
Target:  5'- cGGCGCGUCGAuCGGCaUGucGC-GCGCGg -3'
miRNA:   3'- -UCGCGUAGUUuGCCGaAC--CGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14620 0.67 0.734859
Target:  5'- cGGCGcCGUCGAggGCGcGCUcacGGCAgccgGCGCGg -3'
miRNA:   3'- -UCGC-GUAGUU--UGC-CGAa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15158 0.66 0.808953
Target:  5'- aGGCGC-UC-GACGGCaUGGCGAagUACc -3'
miRNA:   3'- -UCGCGuAGuUUGCCGaACCGUU--GUGc -5'
28045 5' -51.8 NC_005887.1 + 15621 0.7 0.597236
Target:  5'- cGCGCAgCAGGCGGCcgGGCu-CGCc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaaCCGuuGUGc -5'
28045 5' -51.8 NC_005887.1 + 15824 0.68 0.666709
Target:  5'- aGGCGCAggugC-AGC-GCUUGcGCGGCGCGa -3'
miRNA:   3'- -UCGCGUa---GuUUGcCGAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 16871 0.67 0.756802
Target:  5'- cGGCGCG---GACGGCUcgacaGGCAACGa- -3'
miRNA:   3'- -UCGCGUaguUUGCCGAa----CCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 16950 0.66 0.778179
Target:  5'- gAGCGCuUCAAccgcGCGGC--GGCAAUgucgGCGa -3'
miRNA:   3'- -UCGCGuAGUU----UGCCGaaCCGUUG----UGC- -5'
28045 5' -51.8 NC_005887.1 + 17014 0.7 0.585708
Target:  5'- cGCGCAgagCAAGguGCUUGGCAACGg- -3'
miRNA:   3'- uCGCGUa--GUUUgcCGAACCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 17398 0.66 0.788622
Target:  5'- cGCGCugGUCGAucacguCGGC--GGCAugGCGa -3'
miRNA:   3'- uCGCG--UAGUUu-----GCCGaaCCGUugUGC- -5'
28045 5' -51.8 NC_005887.1 + 18131 1.09 0.00156
Target:  5'- cAGCGCAUCAAACGGCUUGGCAACACGc -3'
miRNA:   3'- -UCGCGUAGUUUGCCGAACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18539 0.69 0.65515
Target:  5'- gGGCGUucUCGGugGGC--GGCGGCGCc -3'
miRNA:   3'- -UCGCGu-AGUUugCCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 18690 0.67 0.734859
Target:  5'- cGUGCAggauGCGGCgcagGGCAaggACACGc -3'
miRNA:   3'- uCGCGUaguuUGCCGaa--CCGU---UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18767 0.66 0.802936
Target:  5'- cAGCGCGUCGuAGucgcguucgcacugcCGGCc-GGCGAUGCGg -3'
miRNA:   3'- -UCGCGUAGU-UU---------------GCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18952 0.74 0.374441
Target:  5'- cGCGCugcu-GCGGCUgccagcGGCAGCGCGa -3'
miRNA:   3'- uCGCGuaguuUGCCGAa-----CCGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.