miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 979 0.69 0.643568
Target:  5'- cGCGCAcggucugcUCGAAC-GCUUcccGGCGGCGCGc -3'
miRNA:   3'- uCGCGU--------AGUUUGcCGAA---CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1178 0.7 0.601857
Target:  5'- aGGCGgAUCAuguucgacaccauuGCGGCUuucUGGC-ACGCGg -3'
miRNA:   3'- -UCGCgUAGUu-------------UGCCGA---ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1494 0.68 0.699982
Target:  5'- cGGCGC-UCGcGCGGCgcGGCcgugcggAACACGu -3'
miRNA:   3'- -UCGCGuAGUuUGCCGaaCCG-------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1555 0.74 0.362547
Target:  5'- cGGCGCGUCGccgccacgaaccucGAccgcCGGCUcGGCGGCGCGc -3'
miRNA:   3'- -UCGCGUAGU--------------UU----GCCGAaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1986 0.66 0.778179
Target:  5'- cGCGCG-CGAcgGCGGCacGGCcGCGCu -3'
miRNA:   3'- uCGCGUaGUU--UGCCGaaCCGuUGUGc -5'
28045 5' -51.8 NC_005887.1 + 2192 0.7 0.562793
Target:  5'- cGCGCAgcUCAcacGCGGCgaGcGCGGCGCGc -3'
miRNA:   3'- uCGCGU--AGUu--UGCCGaaC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2207 0.66 0.798884
Target:  5'- cAGCGCAaacCGAugGGCggcUGGC-GCAUc -3'
miRNA:   3'- -UCGCGUa--GUUugCCGa--ACCGuUGUGc -5'
28045 5' -51.8 NC_005887.1 + 2420 0.68 0.70112
Target:  5'- uGCGCGUCGucGACGcGCccGGCucgaucuGCGCGg -3'
miRNA:   3'- uCGCGUAGU--UUGC-CGaaCCGu------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2544 0.7 0.601856
Target:  5'- aGGCGCuGUCGGGCGGCUacugcuuccgccgcaUGGCcgugaGCGg -3'
miRNA:   3'- -UCGCG-UAGUUUGCCGA---------------ACCGuug--UGC- -5'
28045 5' -51.8 NC_005887.1 + 3135 0.66 0.778179
Target:  5'- uGCGCAaggCGAAgGGCUUGacgcuGCAGCAg- -3'
miRNA:   3'- uCGCGUa--GUUUgCCGAAC-----CGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 4601 0.67 0.745894
Target:  5'- cGCGCAgaugCAAcagaugcucgccGCGGCgccggUGGCcgccGGCGCGa -3'
miRNA:   3'- uCGCGUa---GUU------------UGCCGa----ACCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 4667 0.68 0.689707
Target:  5'- cGCGCAgaccgcugcgCAGACGGCgagGGUcugaugGGCGCGc -3'
miRNA:   3'- uCGCGUa---------GUUUGCCGaa-CCG------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 5968 0.73 0.402879
Target:  5'- uGGCGCGUC---CGGCgauGCAGCACGa -3'
miRNA:   3'- -UCGCGUAGuuuGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 6303 0.7 0.582258
Target:  5'- gAGCGCGUCGAGgccuugcgccucgcCGGCgccgaGGUGACGCu -3'
miRNA:   3'- -UCGCGUAGUUU--------------GCCGaa---CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 6966 0.66 0.798885
Target:  5'- gGGCGCAUCGAGCaugaGCUgugcaGGCc-CGCGu -3'
miRNA:   3'- -UCGCGUAGUUUGc---CGAa----CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 7108 0.66 0.778179
Target:  5'- cGCGCGUgGucuAACgaGGCggGGCGGCGCu -3'
miRNA:   3'- uCGCGUAgU---UUG--CCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 7578 0.66 0.828462
Target:  5'- aGGCGUAUcCGGACGGCaucgcguaaGCGGCGCc -3'
miRNA:   3'- -UCGCGUA-GUUUGCCGaac------CGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 9582 0.7 0.574224
Target:  5'- uGCGCA-CGAGcCGGCUgcaUGGC-GCGCGc -3'
miRNA:   3'- uCGCGUaGUUU-GCCGA---ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 10156 0.69 0.608796
Target:  5'- gAGCGaCGUCu-ACGGCU-GGCAucggcauccggACGCGa -3'
miRNA:   3'- -UCGC-GUAGuuUGCCGAaCCGU-----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 11010 0.69 0.65515
Target:  5'- gGGC-CAUCGacGACGGCccGGuCGGCACGu -3'
miRNA:   3'- -UCGcGUAGU--UUGCCGaaCC-GUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.