miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 41927 0.7 0.551423
Target:  5'- gAGCGCAgcaacagCGGGCGGC---GCGGCGCGu -3'
miRNA:   3'- -UCGCGUa------GUUUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41816 0.68 0.70112
Target:  5'- cGGCGCggCGcGCGGC--GGCcGACGCGu -3'
miRNA:   3'- -UCGCGuaGUuUGCCGaaCCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41664 0.67 0.745895
Target:  5'- gAGCaGCAUCGAcuCGGCgagcaGCAGCACc -3'
miRNA:   3'- -UCG-CGUAGUUu-GCCGaac--CGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 41352 0.69 0.65515
Target:  5'- cAGCGCG-CGcACGGCggccGGCAauuuGCGCGu -3'
miRNA:   3'- -UCGCGUaGUuUGCCGaa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40534 0.69 0.631973
Target:  5'- cGCGCGgcagCGacGACGGUcUGGCGcucgcGCACGa -3'
miRNA:   3'- uCGCGUa---GU--UUGCCGaACCGU-----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40235 0.71 0.528904
Target:  5'- cAGCGUGcCGagcGACGGCUUcGGCAAUAUGu -3'
miRNA:   3'- -UCGCGUaGU---UUGCCGAA-CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40021 0.76 0.267573
Target:  5'- uGCGCAUCAuggcGCGGCUcgaGGCGGC-CGg -3'
miRNA:   3'- uCGCGUAGUu---UGCCGAa--CCGUUGuGC- -5'
28045 5' -51.8 NC_005887.1 + 39893 0.7 0.574224
Target:  5'- cAGCGCcUCGucGACGGCgccGUAGCGCGc -3'
miRNA:   3'- -UCGCGuAGU--UUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 39832 0.68 0.712459
Target:  5'- uGCGCAgCGuGCGGCaguccGGguGCACGa -3'
miRNA:   3'- uCGCGUaGUuUGCCGaa---CCguUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 39425 0.67 0.756802
Target:  5'- cGGCGC-UUgcGCaGCUUGGCGGCgGCGu -3'
miRNA:   3'- -UCGCGuAGuuUGcCGAACCGUUG-UGC- -5'
28045 5' -51.8 NC_005887.1 + 39018 0.67 0.723709
Target:  5'- cGCGCAgUCGAcgGCGGCUUGcuGCGGagucaGCGa -3'
miRNA:   3'- uCGCGU-AGUU--UGCCGAAC--CGUUg----UGC- -5'
28045 5' -51.8 NC_005887.1 + 38168 0.68 0.712458
Target:  5'- gAGCGCGaaaUAGGCGGUgu-GCAGCAUGg -3'
miRNA:   3'- -UCGCGUa--GUUUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 38015 0.67 0.756802
Target:  5'- cGGCGUcgAUCAGuuccuGCGGCauguccGGCAGCugGc -3'
miRNA:   3'- -UCGCG--UAGUU-----UGCCGaa----CCGUUGugC- -5'
28045 5' -51.8 NC_005887.1 + 37222 0.74 0.373516
Target:  5'- gAGCGUcuuGUCAGcccACGGCUUgagcucgacacccGGCGGCACGu -3'
miRNA:   3'- -UCGCG---UAGUU---UGCCGAA-------------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 37198 0.71 0.491453
Target:  5'- --aGCAUC-AGCGGCgcgccgacgucgGGCAGCGCGg -3'
miRNA:   3'- ucgCGUAGuUUGCCGaa----------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 36521 0.72 0.453192
Target:  5'- cGCaGCAUCGGGCGGCggcaGGUAuuuCGCGa -3'
miRNA:   3'- uCG-CGUAGUUUGCCGaa--CCGUu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 36024 0.69 0.608796
Target:  5'- cAGCaGCGUCAccuCGGCgccGGCGAgGCGc -3'
miRNA:   3'- -UCG-CGUAGUuu-GCCGaa-CCGUUgUGC- -5'
28045 5' -51.8 NC_005887.1 + 35680 0.68 0.678232
Target:  5'- cAGCGCG-CGAuCGGCggccGGCuuCGCGg -3'
miRNA:   3'- -UCGCGUaGUUuGCCGaa--CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35080 0.68 0.69428
Target:  5'- gGGCGCGacuucgaagucgucuUCGGGCGGUUgaauuucgagGGCGggGCGCGg -3'
miRNA:   3'- -UCGCGU---------------AGUUUGCCGAa---------CCGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35031 0.67 0.756802
Target:  5'- cAGuCGUGUUGucGGCGGCgacggacGGCGACACGa -3'
miRNA:   3'- -UC-GCGUAGU--UUGCCGaa-----CCGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.