miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 35680 0.68 0.678232
Target:  5'- cAGCGCG-CGAuCGGCggccGGCuuCGCGg -3'
miRNA:   3'- -UCGCGUaGUUuGCCGaa--CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 19724 0.7 0.597236
Target:  5'- gGGUGUcgCGGAucUGGUgcaUUGGCGGCACGa -3'
miRNA:   3'- -UCGCGuaGUUU--GCCG---AACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2544 0.7 0.601856
Target:  5'- aGGCGCuGUCGGGCGGCUacugcuuccgccgcaUGGCcgugaGCGg -3'
miRNA:   3'- -UCGCG-UAGUUUGCCGA---------------ACCGuug--UGC- -5'
28045 5' -51.8 NC_005887.1 + 10156 0.69 0.608796
Target:  5'- gAGCGaCGUCu-ACGGCU-GGCAucggcauccggACGCGa -3'
miRNA:   3'- -UCGC-GUAGuuUGCCGAaCCGU-----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 36024 0.69 0.608796
Target:  5'- cAGCaGCGUCAccuCGGCgccGGCGAgGCGc -3'
miRNA:   3'- -UCG-CGUAGUuu-GCCGaa-CCGUUgUGC- -5'
28045 5' -51.8 NC_005887.1 + 40534 0.69 0.631973
Target:  5'- cGCGCGgcagCGacGACGGUcUGGCGcucgcGCACGa -3'
miRNA:   3'- uCGCGUa---GU--UUGCCGaACCGU-----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18539 0.69 0.65515
Target:  5'- gGGCGUucUCGGugGGC--GGCGGCGCc -3'
miRNA:   3'- -UCGCGu-AGUUugCCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27232 0.69 0.65515
Target:  5'- gGGCGCAUC--GCGGCgcaacuGCAucGCGCGc -3'
miRNA:   3'- -UCGCGUAGuuUGCCGaac---CGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15824 0.68 0.666709
Target:  5'- aGGCGCAggugC-AGC-GCUUGcGCGGCGCGa -3'
miRNA:   3'- -UCGCGUa---GuUUGcCGAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15621 0.7 0.597236
Target:  5'- cGCGCAgCAGGCGGCcgGGCu-CGCc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaaCCGuuGUGc -5'
28045 5' -51.8 NC_005887.1 + 11100 0.7 0.59262
Target:  5'- uGGCGCAUCGgcuggugcgcgcgaAGCuggccgaGGCgccgUGGCGGCGCa -3'
miRNA:   3'- -UCGCGUAGU--------------UUG-------CCGa---ACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 17014 0.7 0.585708
Target:  5'- cGCGCAgagCAAGguGCUUGGCAACGg- -3'
miRNA:   3'- uCGCGUa--GUUUgcCGAACCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 32719 0.76 0.274841
Target:  5'- cGCGguUCAcccACGGCggGGUAGCGCGg -3'
miRNA:   3'- uCGCguAGUu--UGCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 28214 0.76 0.274841
Target:  5'- cGCGCGUCucGGCGGuUUUGaGCAGCGCGc -3'
miRNA:   3'- uCGCGUAGu-UUGCC-GAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 37222 0.74 0.373516
Target:  5'- gAGCGUcuuGUCAGcccACGGCUUgagcucgacacccGGCGGCACGu -3'
miRNA:   3'- -UCGCG---UAGUU---UGCCGAA-------------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 5968 0.73 0.402879
Target:  5'- uGGCGCGUC---CGGCgauGCAGCACGa -3'
miRNA:   3'- -UCGCGUAGuuuGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 36521 0.72 0.453192
Target:  5'- cGCaGCAUCGGGCGGCggcaGGUAuuuCGCGa -3'
miRNA:   3'- uCG-CGUAGUUUGCCGaa--CCGUu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 40235 0.71 0.528904
Target:  5'- cAGCGUGcCGagcGACGGCUUcGGCAAUAUGu -3'
miRNA:   3'- -UCGCGUaGU---UUGCCGAA-CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14545 0.71 0.540124
Target:  5'- cGGCGCGUCGAuCGGCaUGucGC-GCGCGg -3'
miRNA:   3'- -UCGCGUAGUUuGCCGaAC--CGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26077 0.7 0.574224
Target:  5'- cAGCGCGUC-AGCGGCccgcgcGGCGuuuCAUGg -3'
miRNA:   3'- -UCGCGUAGuUUGCCGaa----CCGUu--GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.