miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 27974 0.66 0.828462
Target:  5'- cGCGCGcCGAGCGGCgacucgaacaGGUgcccGGCACGc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaa--------CCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2420 0.68 0.70112
Target:  5'- uGCGCGUCGucGACGcGCccGGCucgaucuGCGCGg -3'
miRNA:   3'- uCGCGUAGU--UUGC-CGaaCCGu------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41352 0.69 0.65515
Target:  5'- cAGCGCG-CGcACGGCggccGGCAauuuGCGCGu -3'
miRNA:   3'- -UCGCGUaGUuUGCCGaa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18131 1.09 0.00156
Target:  5'- cAGCGCAUCAAACGGCUUGGCAACACGc -3'
miRNA:   3'- -UCGCGUAGUUUGCCGAACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27338 0.66 0.788622
Target:  5'- cAGCGCGagcaucagcUCGGGCGGCacgccugcGGCcuGCGCGg -3'
miRNA:   3'- -UCGCGU---------AGUUUGCCGaa------CCGu-UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 32418 0.66 0.778179
Target:  5'- cGCGCAgCuuGCGGCc-GGCcuucuGCACGa -3'
miRNA:   3'- uCGCGUaGuuUGCCGaaCCGu----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 3135 0.66 0.778179
Target:  5'- uGCGCAaggCGAAgGGCUUGacgcuGCAGCAg- -3'
miRNA:   3'- uCGCGUa--GUUUgCCGAAC-----CGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 39425 0.67 0.756802
Target:  5'- cGGCGC-UUgcGCaGCUUGGCGGCgGCGu -3'
miRNA:   3'- -UCGCGuAGuuUGcCGAACCGUUG-UGC- -5'
28045 5' -51.8 NC_005887.1 + 26464 0.67 0.756802
Target:  5'- uGCGCGUCGAGCGcaccgaGCUgcUGGUGcgccugcugcGCGCGg -3'
miRNA:   3'- uCGCGUAGUUUGC------CGA--ACCGU----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26421 0.68 0.712459
Target:  5'- cGGCGCAUCGAuucCGGCccGcGCGgaACGCa -3'
miRNA:   3'- -UCGCGUAGUUu--GCCGaaC-CGU--UGUGc -5'
28045 5' -51.8 NC_005887.1 + 25823 0.67 0.73486
Target:  5'- cGCGCc-CAcuCGGCgccggcGGCGACGCGa -3'
miRNA:   3'- uCGCGuaGUuuGCCGaa----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35031 0.67 0.756802
Target:  5'- cAGuCGUGUUGucGGCGGCgacggacGGCGACACGa -3'
miRNA:   3'- -UC-GCGUAGU--UUGCCGaa-----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26872 0.66 0.818817
Target:  5'- cGCGCGgccagcUCGAACGcGuCUUGGUG-CGCGg -3'
miRNA:   3'- uCGCGU------AGUUUGC-C-GAACCGUuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 29896 0.68 0.712459
Target:  5'- cGCGCGUCGAACcguacaGGCUcgGGUccauCGCGa -3'
miRNA:   3'- uCGCGUAGUUUG------CCGAa-CCGuu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 18767 0.66 0.802936
Target:  5'- cAGCGCGUCGuAGucgcguucgcacugcCGGCc-GGCGAUGCGg -3'
miRNA:   3'- -UCGCGUAGU-UU---------------GCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 38015 0.67 0.756802
Target:  5'- cGGCGUcgAUCAGuuccuGCGGCauguccGGCAGCugGc -3'
miRNA:   3'- -UCGCG--UAGUU-----UGCCGaa----CCGUUGugC- -5'
28045 5' -51.8 NC_005887.1 + 39832 0.68 0.712459
Target:  5'- uGCGCAgCGuGCGGCaguccGGguGCACGa -3'
miRNA:   3'- uCGCGUaGUuUGCCGaa---CCguUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41816 0.68 0.70112
Target:  5'- cGGCGCggCGcGCGGC--GGCcGACGCGu -3'
miRNA:   3'- -UCGCGuaGUuUGCCGaaCCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 6966 0.66 0.798885
Target:  5'- gGGCGCAUCGAGCaugaGCUgugcaGGCc-CGCGu -3'
miRNA:   3'- -UCGCGUAGUUUGc---CGAa----CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1986 0.66 0.778179
Target:  5'- cGCGCG-CGAcgGCGGCacGGCcGCGCu -3'
miRNA:   3'- uCGCGUaGUU--UGCCGaaCCGuUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.