miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 18131 1.09 0.00156
Target:  5'- cAGCGCAUCAAACGGCUUGGCAACACGc -3'
miRNA:   3'- -UCGCGUAGUUUGCCGAACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27689 0.79 0.181504
Target:  5'- gGGCaGCGUCGAAcCGGCgacgGGCAGCACc -3'
miRNA:   3'- -UCG-CGUAGUUU-GCCGaa--CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 40021 0.76 0.267573
Target:  5'- uGCGCAUCAuggcGCGGCUcgaGGCGGC-CGg -3'
miRNA:   3'- uCGCGUAGUu---UGCCGAa--CCGUUGuGC- -5'
28045 5' -51.8 NC_005887.1 + 32719 0.76 0.274841
Target:  5'- cGCGguUCAcccACGGCggGGUAGCGCGg -3'
miRNA:   3'- uCGCguAGUu--UGCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 28214 0.76 0.274841
Target:  5'- cGCGCGUCucGGCGGuUUUGaGCAGCGCGc -3'
miRNA:   3'- uCGCGUAGu-UUGCC-GAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 12631 0.74 0.347393
Target:  5'- cGGCGCGUgAuccugcgacgcGACGGCgagUGGCuGCGCGu -3'
miRNA:   3'- -UCGCGUAgU-----------UUGCCGa--ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1555 0.74 0.362547
Target:  5'- cGGCGCGUCGccgccacgaaccucGAccgcCGGCUcGGCGGCGCGc -3'
miRNA:   3'- -UCGCGUAGU--------------UU----GCCGAaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 37222 0.74 0.373516
Target:  5'- gAGCGUcuuGUCAGcccACGGCUUgagcucgacacccGGCGGCACGu -3'
miRNA:   3'- -UCGCG---UAGUU---UGCCGAA-------------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18952 0.74 0.374441
Target:  5'- cGCGCugcu-GCGGCUgccagcGGCAGCGCGa -3'
miRNA:   3'- uCGCGuaguuUGCCGAa-----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 30937 0.73 0.393248
Target:  5'- uGCGC-UCAGACGaugcCUUGGCGGCGCc -3'
miRNA:   3'- uCGCGuAGUUUGCc---GAACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 5968 0.73 0.402879
Target:  5'- uGGCGCGUC---CGGCgauGCAGCACGa -3'
miRNA:   3'- -UCGCGUAGuuuGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 13868 0.72 0.446973
Target:  5'- cGCGCGUCuacuucgucgagcugAAGCGGCccGGCAACAa- -3'
miRNA:   3'- uCGCGUAG---------------UUUGCCGaaCCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 36521 0.72 0.453192
Target:  5'- cGCaGCAUCGGGCGGCggcaGGUAuuuCGCGa -3'
miRNA:   3'- uCG-CGUAGUUUGCCGaa--CCGUu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 26632 0.72 0.462609
Target:  5'- uGGCGCGUCAGcuccuucacgccgGCGGCggaaucauccGGCcGCGCGg -3'
miRNA:   3'- -UCGCGUAGUU-------------UGCCGaa--------CCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 25019 0.72 0.474255
Target:  5'- uGCGCGUCAGcaucGCGGaaguGCAGCACGc -3'
miRNA:   3'- uCGCGUAGUU----UGCCgaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 37198 0.71 0.491453
Target:  5'- --aGCAUC-AGCGGCgcgccgacgucgGGCAGCGCGg -3'
miRNA:   3'- ucgCGUAGuUUGCCGaa----------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27388 0.71 0.517772
Target:  5'- cGGCGUaggcGUCGAguuGCGGCgcgucguacGGCAGCGCGc -3'
miRNA:   3'- -UCGCG----UAGUU---UGCCGaa-------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40235 0.71 0.528904
Target:  5'- cAGCGUGcCGagcGACGGCUUcGGCAAUAUGu -3'
miRNA:   3'- -UCGCGUaGU---UUGCCGAA-CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14545 0.71 0.540124
Target:  5'- cGGCGCGUCGAuCGGCaUGucGC-GCGCGg -3'
miRNA:   3'- -UCGCGUAGUUuGCCGaAC--CGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41927 0.7 0.551423
Target:  5'- gAGCGCAgcaacagCGGGCGGC---GCGGCGCGu -3'
miRNA:   3'- -UCGCGUa------GUUUGCCGaacCGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.