miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 34378 0.67 0.745894
Target:  5'- cGCGUAUCAGaguGCGGCcgGGCGcgagGCcCGg -3'
miRNA:   3'- uCGCGUAGUU---UGCCGaaCCGU----UGuGC- -5'
28045 5' -51.8 NC_005887.1 + 34281 0.68 0.712458
Target:  5'- uGCGCAugccgUCGccguGCGGCUgacugcgGGCGGCAaCGg -3'
miRNA:   3'- uCGCGU-----AGUu---UGCCGAa------CCGUUGU-GC- -5'
28045 5' -51.8 NC_005887.1 + 33930 0.67 0.766498
Target:  5'- -uCGCGUCGaccugccGACGGCgcucGGCgAGCACGu -3'
miRNA:   3'- ucGCGUAGU-------UUGCCGaa--CCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 33712 0.66 0.827507
Target:  5'- uGGCGCGgcggucgaucugcUCGAucGCGGCgaGGauCAGCGCGc -3'
miRNA:   3'- -UCGCGU-------------AGUU--UGCCGaaCC--GUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 32719 0.76 0.274841
Target:  5'- cGCGguUCAcccACGGCggGGUAGCGCGg -3'
miRNA:   3'- uCGCguAGUu--UGCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 32674 0.66 0.808953
Target:  5'- cGCGCGU---GCGcGCUUcGGCAAcCGCGu -3'
miRNA:   3'- uCGCGUAguuUGC-CGAA-CCGUU-GUGC- -5'
28045 5' -51.8 NC_005887.1 + 32418 0.66 0.778179
Target:  5'- cGCGCAgCuuGCGGCc-GGCcuucuGCACGa -3'
miRNA:   3'- uCGCGUaGuuUGCCGaaCCGu----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 30937 0.73 0.393248
Target:  5'- uGCGC-UCAGACGaugcCUUGGCGGCGCc -3'
miRNA:   3'- uCGCGuAGUUUGCc---GAACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 29896 0.68 0.712459
Target:  5'- cGCGCGUCGAACcguacaGGCUcgGGUccauCGCGa -3'
miRNA:   3'- uCGCGUAGUUUG------CCGAa-CCGuu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 29660 0.66 0.827507
Target:  5'- cGCGCGgcgCGAgguagcacagcugGCGcuuGCUUGGCAgcuGCACGc -3'
miRNA:   3'- uCGCGUa--GUU-------------UGC---CGAACCGU---UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 28376 0.66 0.808953
Target:  5'- -aCGCGUC-GACGGCUUcGCGGCuguCGa -3'
miRNA:   3'- ucGCGUAGuUUGCCGAAcCGUUGu--GC- -5'
28045 5' -51.8 NC_005887.1 + 28214 0.76 0.274841
Target:  5'- cGCGCGUCucGGCGGuUUUGaGCAGCGCGc -3'
miRNA:   3'- uCGCGUAGu-UUGCC-GAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27974 0.66 0.828462
Target:  5'- cGCGCGcCGAGCGGCgacucgaacaGGUgcccGGCACGc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaa--------CCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27689 0.79 0.181504
Target:  5'- gGGCaGCGUCGAAcCGGCgacgGGCAGCACc -3'
miRNA:   3'- -UCG-CGUAGUUU-GCCGaa--CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27527 0.66 0.778179
Target:  5'- -aCGCggCGGGCGGUcaugGGCGGCGCu -3'
miRNA:   3'- ucGCGuaGUUUGCCGaa--CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27388 0.71 0.517772
Target:  5'- cGGCGUaggcGUCGAguuGCGGCgcgucguacGGCAGCGCGc -3'
miRNA:   3'- -UCGCG----UAGUU---UGCCGaa-------CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27338 0.66 0.788622
Target:  5'- cAGCGCGagcaucagcUCGGGCGGCacgccugcGGCcuGCGCGg -3'
miRNA:   3'- -UCGCGU---------AGUUUGCCGaa------CCGu-UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27262 0.7 0.596082
Target:  5'- cGgGCAUCAucugcgacacgccGGCGGCUcccuucGGCGACACc -3'
miRNA:   3'- uCgCGUAGU-------------UUGCCGAa-----CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27232 0.69 0.65515
Target:  5'- gGGCGCAUC--GCGGCgcaacuGCAucGCGCGc -3'
miRNA:   3'- -UCGCGUAGuuUGCCGaac---CGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26872 0.66 0.818817
Target:  5'- cGCGCGgccagcUCGAACGcGuCUUGGUG-CGCGg -3'
miRNA:   3'- uCGCGU------AGUUUGC-C-GAACCGUuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.