miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 41352 0.69 0.65515
Target:  5'- cAGCGCG-CGcACGGCggccGGCAauuuGCGCGu -3'
miRNA:   3'- -UCGCGUaGUuUGCCGaa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 6966 0.66 0.798885
Target:  5'- gGGCGCAUCGAGCaugaGCUgugcaGGCc-CGCGu -3'
miRNA:   3'- -UCGCGUAGUUUGc---CGAa----CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 30937 0.73 0.393248
Target:  5'- uGCGC-UCAGACGaugcCUUGGCGGCGCc -3'
miRNA:   3'- uCGCGuAGUUUGCc---GAACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 2192 0.7 0.562793
Target:  5'- cGCGCAgcUCAcacGCGGCgaGcGCGGCGCGc -3'
miRNA:   3'- uCGCGU--AGUu--UGCCGaaC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2420 0.68 0.70112
Target:  5'- uGCGCGUCGucGACGcGCccGGCucgaucuGCGCGg -3'
miRNA:   3'- uCGCGUAGU--UUGC-CGaaCCGu------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18767 0.66 0.802936
Target:  5'- cAGCGCGUCGuAGucgcguucgcacugcCGGCc-GGCGAUGCGg -3'
miRNA:   3'- -UCGCGUAGU-UU---------------GCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 9582 0.7 0.574224
Target:  5'- uGCGCA-CGAGcCGGCUgcaUGGC-GCGCGc -3'
miRNA:   3'- uCGCGUaGUUU-GCCGA---ACCGuUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26872 0.66 0.818817
Target:  5'- cGCGCGgccagcUCGAACGcGuCUUGGUG-CGCGg -3'
miRNA:   3'- uCGCGU------AGUUUGC-C-GAACCGUuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27974 0.66 0.828462
Target:  5'- cGCGCGcCGAGCGGCgacucgaacaGGUgcccGGCACGc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaa--------CCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35031 0.67 0.756802
Target:  5'- cAGuCGUGUUGucGGCGGCgacggacGGCGACACGa -3'
miRNA:   3'- -UC-GCGUAGU--UUGCCGaa-----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41816 0.68 0.70112
Target:  5'- cGGCGCggCGcGCGGC--GGCcGACGCGu -3'
miRNA:   3'- -UCGCGuaGUuUGCCGaaCCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27262 0.7 0.596082
Target:  5'- cGgGCAUCAucugcgacacgccGGCGGCUcccuucGGCGACACc -3'
miRNA:   3'- uCgCGUAGU-------------UUGCCGAa-----CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 29896 0.68 0.712459
Target:  5'- cGCGCGUCGAACcguacaGGCUcgGGUccauCGCGa -3'
miRNA:   3'- uCGCGUAGUUUG------CCGAa-CCGuu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 26464 0.67 0.756802
Target:  5'- uGCGCGUCGAGCGcaccgaGCUgcUGGUGcgccugcugcGCGCGg -3'
miRNA:   3'- uCGCGUAGUUUGC------CGA--ACCGU----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 3135 0.66 0.778179
Target:  5'- uGCGCAaggCGAAgGGCUUGacgcuGCAGCAg- -3'
miRNA:   3'- uCGCGUa--GUUUgCCGAAC-----CGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 27338 0.66 0.788622
Target:  5'- cAGCGCGagcaucagcUCGGGCGGCacgccugcGGCcuGCGCGg -3'
miRNA:   3'- -UCGCGU---------AGUUUGCCGaa------CCGu-UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 27689 0.79 0.181504
Target:  5'- gGGCaGCGUCGAAcCGGCgacgGGCAGCACc -3'
miRNA:   3'- -UCG-CGUAGUUU-GCCGaa--CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 18952 0.74 0.374441
Target:  5'- cGCGCugcu-GCGGCUgccagcGGCAGCGCGa -3'
miRNA:   3'- uCGCGuaguuUGCCGAa-----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 25019 0.72 0.474255
Target:  5'- uGCGCGUCAGcaucGCGGaaguGCAGCACGc -3'
miRNA:   3'- uCGCGUAGUU----UGCCgaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41927 0.7 0.551423
Target:  5'- gAGCGCAgcaacagCGGGCGGC---GCGGCGCGu -3'
miRNA:   3'- -UCGCGUa------GUUUGCCGaacCGUUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.