miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 27527 0.66 0.778179
Target:  5'- -aCGCggCGGGCGGUcaugGGCGGCGCu -3'
miRNA:   3'- ucGCGuaGUUUGCCGaa--CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 3135 0.66 0.778179
Target:  5'- uGCGCAaggCGAAgGGCUUGacgcuGCAGCAg- -3'
miRNA:   3'- uCGCGUa--GUUUgCCGAAC-----CGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 33930 0.67 0.766498
Target:  5'- -uCGCGUCGaccugccGACGGCgcucGGCgAGCACGu -3'
miRNA:   3'- ucGCGUAGU-------UUGCCGaa--CCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 16871 0.67 0.756802
Target:  5'- cGGCGCG---GACGGCUcgacaGGCAACGa- -3'
miRNA:   3'- -UCGCGUaguUUGCCGAa----CCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 39425 0.67 0.756802
Target:  5'- cGGCGC-UUgcGCaGCUUGGCGGCgGCGu -3'
miRNA:   3'- -UCGCGuAGuuUGcCGAACCGUUG-UGC- -5'
28045 5' -51.8 NC_005887.1 + 38015 0.67 0.756802
Target:  5'- cGGCGUcgAUCAGuuccuGCGGCauguccGGCAGCugGc -3'
miRNA:   3'- -UCGCG--UAGUU-----UGCCGaa----CCGUUGugC- -5'
28045 5' -51.8 NC_005887.1 + 35031 0.67 0.756802
Target:  5'- cAGuCGUGUUGucGGCGGCgacggacGGCGACACGa -3'
miRNA:   3'- -UC-GCGUAGU--UUGCCGaa-----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26464 0.67 0.756802
Target:  5'- uGCGCGUCGAGCGcaccgaGCUgcUGGUGcgccugcugcGCGCGg -3'
miRNA:   3'- uCGCGUAGUUUGC------CGA--ACCGU----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41664 0.67 0.745895
Target:  5'- gAGCaGCAUCGAcuCGGCgagcaGCAGCACc -3'
miRNA:   3'- -UCG-CGUAGUUu-GCCGaac--CGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 34378 0.67 0.745894
Target:  5'- cGCGUAUCAGaguGCGGCcgGGCGcgagGCcCGg -3'
miRNA:   3'- uCGCGUAGUU---UGCCGaaCCGU----UGuGC- -5'
28045 5' -51.8 NC_005887.1 + 4601 0.67 0.745894
Target:  5'- cGCGCAgaugCAAcagaugcucgccGCGGCgccggUGGCcgccGGCGCGa -3'
miRNA:   3'- uCGCGUa---GUU------------UGCCGa----ACCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 25823 0.67 0.73486
Target:  5'- cGCGCc-CAcuCGGCgccggcGGCGACGCGa -3'
miRNA:   3'- uCGCGuaGUuuGCCGaa----CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18690 0.67 0.734859
Target:  5'- cGUGCAggauGCGGCgcagGGCAaggACACGc -3'
miRNA:   3'- uCGCGUaguuUGCCGaa--CCGU---UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14620 0.67 0.734859
Target:  5'- cGGCGcCGUCGAggGCGcGCUcacGGCAgccgGCGCGg -3'
miRNA:   3'- -UCGC-GUAGUU--UGC-CGAa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 39018 0.67 0.723709
Target:  5'- cGCGCAgUCGAcgGCGGCUUGcuGCGGagucaGCGa -3'
miRNA:   3'- uCGCGU-AGUU--UGCCGAAC--CGUUg----UGC- -5'
28045 5' -51.8 NC_005887.1 + 26421 0.68 0.712459
Target:  5'- cGGCGCAUCGAuucCGGCccGcGCGgaACGCa -3'
miRNA:   3'- -UCGCGUAGUUu--GCCGaaC-CGU--UGUGc -5'
28045 5' -51.8 NC_005887.1 + 39832 0.68 0.712459
Target:  5'- uGCGCAgCGuGCGGCaguccGGguGCACGa -3'
miRNA:   3'- uCGCGUaGUuUGCCGaa---CCguUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 29896 0.68 0.712459
Target:  5'- cGCGCGUCGAACcguacaGGCUcgGGUccauCGCGa -3'
miRNA:   3'- uCGCGUAGUUUG------CCGAa-CCGuu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 14195 0.68 0.712458
Target:  5'- cGCGCuGUCGGgcGCGGCcucggacagGGCGGCGCc -3'
miRNA:   3'- uCGCG-UAGUU--UGCCGaa-------CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 38168 0.68 0.712458
Target:  5'- gAGCGCGaaaUAGGCGGUgu-GCAGCAUGg -3'
miRNA:   3'- -UCGCGUa--GUUUGCCGaacCGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.