miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 38168 0.68 0.712458
Target:  5'- gAGCGCGaaaUAGGCGGUgu-GCAGCAUGg -3'
miRNA:   3'- -UCGCGUa--GUUUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14195 0.68 0.712458
Target:  5'- cGCGCuGUCGGgcGCGGCcucggacagGGCGGCGCc -3'
miRNA:   3'- uCGCG-UAGUU--UGCCGaa-------CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 41816 0.68 0.70112
Target:  5'- cGGCGCggCGcGCGGC--GGCcGACGCGu -3'
miRNA:   3'- -UCGCGuaGUuUGCCGaaCCG-UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2420 0.68 0.70112
Target:  5'- uGCGCGUCGucGACGcGCccGGCucgaucuGCGCGg -3'
miRNA:   3'- uCGCGUAGU--UUGC-CGaaCCGu------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 1494 0.68 0.699982
Target:  5'- cGGCGC-UCGcGCGGCgcGGCcgugcggAACACGu -3'
miRNA:   3'- -UCGCGuAGUuUGCCGaaCCG-------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35080 0.68 0.69428
Target:  5'- gGGCGCGacuucgaagucgucuUCGGGCGGUUgaauuucgagGGCGggGCGCGg -3'
miRNA:   3'- -UCGCGU---------------AGUUUGCCGAa---------CCGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 13599 0.68 0.689707
Target:  5'- cGCGUAcuUCAucGCuGC-UGGCAGCGCGg -3'
miRNA:   3'- uCGCGU--AGUu-UGcCGaACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 19359 0.68 0.689707
Target:  5'- cGCGCAgCAGACGcGUgcGGCGACGa- -3'
miRNA:   3'- uCGCGUaGUUUGC-CGaaCCGUUGUgc -5'
28045 5' -51.8 NC_005887.1 + 4667 0.68 0.689707
Target:  5'- cGCGCAgaccgcugcgCAGACGGCgagGGUcugaugGGCGCGc -3'
miRNA:   3'- uCGCGUa---------GUUUGCCGaa-CCG------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 35680 0.68 0.678232
Target:  5'- cAGCGCG-CGAuCGGCggccGGCuuCGCGg -3'
miRNA:   3'- -UCGCGUaGUUuGCCGaa--CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15824 0.68 0.666709
Target:  5'- aGGCGCAggugC-AGC-GCUUGcGCGGCGCGa -3'
miRNA:   3'- -UCGCGUa---GuUUGcCGAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 41352 0.69 0.65515
Target:  5'- cAGCGCG-CGcACGGCggccGGCAauuuGCGCGu -3'
miRNA:   3'- -UCGCGUaGUuUGCCGaa--CCGU----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 11010 0.69 0.65515
Target:  5'- gGGC-CAUCGacGACGGCccGGuCGGCACGu -3'
miRNA:   3'- -UCGcGUAGU--UUGCCGaaCC-GUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 18539 0.69 0.65515
Target:  5'- gGGCGUucUCGGugGGC--GGCGGCGCc -3'
miRNA:   3'- -UCGCGu-AGUUugCCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27232 0.69 0.65515
Target:  5'- gGGCGCAUC--GCGGCgcaacuGCAucGCGCGc -3'
miRNA:   3'- -UCGCGUAGuuUGCCGaac---CGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 979 0.69 0.643568
Target:  5'- cGCGCAcggucugcUCGAAC-GCUUcccGGCGGCGCGc -3'
miRNA:   3'- uCGCGU--------AGUUUGcCGAA---CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 40534 0.69 0.631973
Target:  5'- cGCGCGgcagCGacGACGGUcUGGCGcucgcGCACGa -3'
miRNA:   3'- uCGCGUa---GU--UUGCCGaACCGU-----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 10156 0.69 0.608796
Target:  5'- gAGCGaCGUCu-ACGGCU-GGCAucggcauccggACGCGa -3'
miRNA:   3'- -UCGC-GUAGuuUGCCGAaCCGU-----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 36024 0.69 0.608796
Target:  5'- cAGCaGCGUCAccuCGGCgccGGCGAgGCGc -3'
miRNA:   3'- -UCG-CGUAGUuu-GCCGaa-CCGUUgUGC- -5'
28045 5' -51.8 NC_005887.1 + 1178 0.7 0.601857
Target:  5'- aGGCGgAUCAuguucgacaccauuGCGGCUuucUGGC-ACGCGg -3'
miRNA:   3'- -UCGCgUAGUu-------------UGCCGA---ACCGuUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.