miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28046 5' -59.1 NC_005887.1 + 17735 1.03 0.00072
Target:  5'- gUUCGACCACGCGUGCGGCCGCAAGAUc -3'
miRNA:   3'- -AAGCUGGUGCGCACGCCGGCGUUCUA- -5'
28046 5' -59.1 NC_005887.1 + 24949 0.75 0.099377
Target:  5'- -gCGugCGCGCGggccgccuugcgcGCGGCCGCGAGGg -3'
miRNA:   3'- aaGCugGUGCGCa------------CGCCGGCGUUCUa -5'
28046 5' -59.1 NC_005887.1 + 40608 0.74 0.103447
Target:  5'- cUCGACgaGCGUGUGUGGCCGCAc--- -3'
miRNA:   3'- aAGCUGg-UGCGCACGCCGGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 1782 0.71 0.185759
Target:  5'- cUCGACCuGCGCGU-CGGCCGCuacccgaAGGAc -3'
miRNA:   3'- aAGCUGG-UGCGCAcGCCGGCG-------UUCUa -5'
28046 5' -59.1 NC_005887.1 + 5930 0.7 0.2132
Target:  5'- -cCGGCCGCGCGgaagGCGGUgCGCAAa-- -3'
miRNA:   3'- aaGCUGGUGCGCa---CGCCG-GCGUUcua -5'
28046 5' -59.1 NC_005887.1 + 13306 0.7 0.218974
Target:  5'- aUCGGCCAgGCGUucggcaacGcCGGCCGCAucgcGGAUc -3'
miRNA:   3'- aAGCUGGUgCGCA--------C-GCCGGCGU----UCUA- -5'
28046 5' -59.1 NC_005887.1 + 17394 0.7 0.230921
Target:  5'- -gCGGCCGCGCGcaagGCGGcCCGCGc--- -3'
miRNA:   3'- aaGCUGGUGCGCa---CGCC-GGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 13698 0.69 0.249868
Target:  5'- cUCGACCACG-G-GCGGCCaGC-AGAUc -3'
miRNA:   3'- aAGCUGGUGCgCaCGCCGG-CGuUCUA- -5'
28046 5' -59.1 NC_005887.1 + 14362 0.69 0.250521
Target:  5'- -cCGACgACGCGauucggcccgagccgGCGGCgGCAAGAg -3'
miRNA:   3'- aaGCUGgUGCGCa--------------CGCCGgCGUUCUa -5'
28046 5' -59.1 NC_005887.1 + 25155 0.69 0.255797
Target:  5'- -gCGGCgCAacauugcCGCGUGCGGCCGCGu--- -3'
miRNA:   3'- aaGCUG-GU-------GCGCACGCCGGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 41838 0.69 0.27008
Target:  5'- -aCGACCACGCGaucugGCGG-CGCcuGAUg -3'
miRNA:   3'- aaGCUGGUGCGCa----CGCCgGCGuuCUA- -5'
28046 5' -59.1 NC_005887.1 + 26423 0.69 0.27008
Target:  5'- -gCGGCCGCGCGggaacgcgcgcUGCaGCCGCGcgAGAUc -3'
miRNA:   3'- aaGCUGGUGCGC-----------ACGcCGGCGU--UCUA- -5'
28046 5' -59.1 NC_005887.1 + 36515 0.68 0.277104
Target:  5'- gUCGACCGCaGCaucggGCGGCgGCAGGu- -3'
miRNA:   3'- aAGCUGGUG-CGca---CGCCGgCGUUCua -5'
28046 5' -59.1 NC_005887.1 + 30627 0.68 0.299049
Target:  5'- aUUCGugCGCGcCGUGCGcGCgGCGAa-- -3'
miRNA:   3'- -AAGCugGUGC-GCACGC-CGgCGUUcua -5'
28046 5' -59.1 NC_005887.1 + 1489 0.68 0.314413
Target:  5'- cUUCGACgCGCGCG-GCGGCuucgcCGguGGAUc -3'
miRNA:   3'- -AAGCUG-GUGCGCaCGCCG-----GCguUCUA- -5'
28046 5' -59.1 NC_005887.1 + 17813 0.67 0.322316
Target:  5'- -cCGGCCGaagGUGCGGCCGCGcguGAUg -3'
miRNA:   3'- aaGCUGGUgcgCACGCCGGCGUu--CUA- -5'
28046 5' -59.1 NC_005887.1 + 13624 0.67 0.338564
Target:  5'- -gCGG-CGCGCG-GCGGCCGCAc--- -3'
miRNA:   3'- aaGCUgGUGCGCaCGCCGGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 27532 0.67 0.338564
Target:  5'- -cCG-CCAUcaGCGUcGCGGCCGCcAGAUu -3'
miRNA:   3'- aaGCuGGUG--CGCA-CGCCGGCGuUCUA- -5'
28046 5' -59.1 NC_005887.1 + 13951 0.67 0.355399
Target:  5'- cUCGGCUGCGaCGUGCGcgugacgacaGCCGCGAa-- -3'
miRNA:   3'- aAGCUGGUGC-GCACGC----------CGGCGUUcua -5'
28046 5' -59.1 NC_005887.1 + 25942 0.67 0.362296
Target:  5'- cUCGGCCGCGUGagcuuccggccgGCGGCCGUcucGAc -3'
miRNA:   3'- aAGCUGGUGCGCa-----------CGCCGGCGuu-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.