Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28046 | 5' | -59.1 | NC_005887.1 | + | 827 | 0.66 | 0.409346 |
Target: 5'- -aUGcUCGCGCGaucGCGGCCGCgAAGAa -3' miRNA: 3'- aaGCuGGUGCGCa--CGCCGGCG-UUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 1489 | 0.68 | 0.314413 |
Target: 5'- cUUCGACgCGCGCG-GCGGCuucgcCGguGGAUc -3' miRNA: 3'- -AAGCUG-GUGCGCaCGCCG-----GCguUCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 1782 | 0.71 | 0.185759 |
Target: 5'- cUCGACCuGCGCGU-CGGCCGCuacccgaAGGAc -3' miRNA: 3'- aAGCUGG-UGCGCAcGCCGGCG-------UUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 5355 | 0.66 | 0.409346 |
Target: 5'- -aCGGCCuGCGCGUGCucGCCgGCGAGc- -3' miRNA: 3'- aaGCUGG-UGCGCACGc-CGG-CGUUCua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 5896 | 0.66 | 0.381738 |
Target: 5'- cUUGACCGCuGCGgGCuGGCCgaaggGCAAGAa -3' miRNA: 3'- aAGCUGGUG-CGCaCG-CCGG-----CGUUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 5930 | 0.7 | 0.2132 |
Target: 5'- -cCGGCCGCGCGgaagGCGGUgCGCAAa-- -3' miRNA: 3'- aaGCUGGUGCGCa---CGCCG-GCGUUcua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 7196 | 0.66 | 0.381738 |
Target: 5'- aUCGugCA-GCGUGaCGGCCGCc---- -3' miRNA: 3'- aAGCugGUgCGCAC-GCCGGCGuucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 8538 | 0.66 | 0.409346 |
Target: 5'- -cCGACCugacaccCGCGUgGUGGCCGUggGu- -3' miRNA: 3'- aaGCUGGu------GCGCA-CGCCGGCGuuCua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 10715 | 0.66 | 0.409346 |
Target: 5'- aUgGACCGCGCgGUGCcGCUGUucGAUg -3' miRNA: 3'- aAgCUGGUGCG-CACGcCGGCGuuCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 11551 | 0.66 | 0.409346 |
Target: 5'- cUCGGCgcgcaGCGCGcgGCGGUCGC-GGAa -3' miRNA: 3'- aAGCUGg----UGCGCa-CGCCGGCGuUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 12660 | 0.66 | 0.409346 |
Target: 5'- -gUGGCUGCGCGUGCaGCUGcCAAGc- -3' miRNA: 3'- aaGCUGGUGCGCACGcCGGC-GUUCua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13306 | 0.7 | 0.218974 |
Target: 5'- aUCGGCCAgGCGUucggcaacGcCGGCCGCAucgcGGAUc -3' miRNA: 3'- aAGCUGGUgCGCA--------C-GCCGGCGU----UCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13624 | 0.67 | 0.338564 |
Target: 5'- -gCGG-CGCGCG-GCGGCCGCAc--- -3' miRNA: 3'- aaGCUgGUGCGCaCGCCGGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13698 | 0.69 | 0.249868 |
Target: 5'- cUCGACCACG-G-GCGGCCaGC-AGAUc -3' miRNA: 3'- aAGCUGGUGCgCaCGCCGG-CGuUCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13951 | 0.67 | 0.355399 |
Target: 5'- cUCGGCUGCGaCGUGCGcgugacgacaGCCGCGAa-- -3' miRNA: 3'- aAGCUGGUGC-GCACGC----------CGGCGUUcua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 14362 | 0.69 | 0.250521 |
Target: 5'- -cCGACgACGCGauucggcccgagccgGCGGCgGCAAGAg -3' miRNA: 3'- aaGCUGgUGCGCa--------------CGCCGgCGUUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 16472 | 0.65 | 0.415965 |
Target: 5'- cUCGACCGCGCGgcaggauccgGCGGgcuggucggcgaugUCGCAGGc- -3' miRNA: 3'- aAGCUGGUGCGCa---------CGCC--------------GGCGUUCua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 17179 | 0.66 | 0.390802 |
Target: 5'- --gGAgCGCGCGaacGCGGCCGCAc--- -3' miRNA: 3'- aagCUgGUGCGCa--CGCCGGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 17394 | 0.7 | 0.230921 |
Target: 5'- -gCGGCCGCGCGcaagGCGGcCCGCGc--- -3' miRNA: 3'- aaGCUGGUGCGCa---CGCC-GGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 17735 | 1.03 | 0.00072 |
Target: 5'- gUUCGACCACGCGUGCGGCCGCAAGAUc -3' miRNA: 3'- -AAGCUGGUGCGCACGCCGGCGUUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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