miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 37182 0.66 0.260527
Target:  5'- cUCGAcGCGUGCcaucaGCAUCaGCgGCgCGCCg -3'
miRNA:   3'- -GGCU-CGCGCGc----CGUAGcCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 22957 0.66 0.258632
Target:  5'- aCCGAuacgcucugcggcaGCuGCGCGaGCAU-GGCgCGuuGCCg -3'
miRNA:   3'- -GGCU--------------CG-CGCGC-CGUAgCCG-GCggCGG- -5'
28047 3' -64.2 NC_005887.1 + 18837 0.66 0.258003
Target:  5'- cCCGcGCguucgucaGCGCGGCcgaacacGUCGGCaagcagaucaagggCGUCGCCg -3'
miRNA:   3'- -GGCuCG--------CGCGCCG-------UAGCCG--------------GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 42080 0.66 0.254254
Target:  5'- aCGAGCGCuGUcGCGUgGGgCGCgaUGCCg -3'
miRNA:   3'- gGCUCGCG-CGcCGUAgCCgGCG--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 28330 0.66 0.254254
Target:  5'- gCCGgcGGCGCGcCGGCGguugcggaGGCgCGCgGCg -3'
miRNA:   3'- -GGC--UCGCGC-GCCGUag------CCG-GCGgCGg -5'
28047 3' -64.2 NC_005887.1 + 12136 0.66 0.254254
Target:  5'- aUCGAaggccGCGaCGCGGCGU-GGCUgGCCGgCg -3'
miRNA:   3'- -GGCU-----CGC-GCGCCGUAgCCGG-CGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 40168 0.66 0.254254
Target:  5'- cCCGAucacCGCGgcCGGCGUCaGGCCGaaguccaUGCCg -3'
miRNA:   3'- -GGCUc---GCGC--GCCGUAG-CCGGCg------GCGG- -5'
28047 3' -64.2 NC_005887.1 + 7994 0.66 0.254254
Target:  5'- gCgGGGCGCuCGucuccaGCcgUGGCCGgCGCCa -3'
miRNA:   3'- -GgCUCGCGcGC------CGuaGCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 12657 0.66 0.248105
Target:  5'- aCGAGUGgGuCGGCgAUUuGCCGCCGaCg -3'
miRNA:   3'- gGCUCGCgC-GCCG-UAGcCGGCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 36306 0.67 0.24208
Target:  5'- gCCGAucUGCGCGGCgGUCGa-CGCCGCg -3'
miRNA:   3'- -GGCUc-GCGCGCCG-UAGCcgGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 25831 0.67 0.24208
Target:  5'- cUCG-GCGCcgGCGGCGacgcgaUCGGCCugcgacaucGCCGaCCa -3'
miRNA:   3'- -GGCuCGCG--CGCCGU------AGCCGG---------CGGC-GG- -5'
28047 3' -64.2 NC_005887.1 + 38646 0.67 0.24208
Target:  5'- gUCG-GCGCGCGGCucgaCGGCgugguagaagauCGCCGaCUu -3'
miRNA:   3'- -GGCuCGCGCGCCGua--GCCG------------GCGGC-GG- -5'
28047 3' -64.2 NC_005887.1 + 18079 0.67 0.24208
Target:  5'- aCUGAuCGCGCuauccGGCGacucgccgUGGCUGCUGCCg -3'
miRNA:   3'- -GGCUcGCGCG-----CCGUa-------GCCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 14358 0.67 0.24208
Target:  5'- -aGcAGCGUGCcgGGCAccuguUCGaGUCGCCGCUc -3'
miRNA:   3'- ggC-UCGCGCG--CCGU-----AGC-CGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 5604 0.67 0.24208
Target:  5'- aCCu-GcCGCGCGGCAUCGGCaCGauuaacaucguuUCGCa -3'
miRNA:   3'- -GGcuC-GCGCGCCGUAGCCG-GC------------GGCGg -5'
28047 3' -64.2 NC_005887.1 + 13522 0.67 0.240297
Target:  5'- aCGGGCauGCGCGccacgaucgcgaauGCgAUCGGCgaugCGCUGCCg -3'
miRNA:   3'- gGCUCG--CGCGC--------------CG-UAGCCG----GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 34114 0.67 0.237935
Target:  5'- gCCGAGCGCuCGGCAgaggauuUCgauuucgccacagagGGCCGacuUGCCa -3'
miRNA:   3'- -GGCUCGCGcGCCGU-------AG---------------CCGGCg--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 9096 0.67 0.236177
Target:  5'- gCC-AGCGCG-GGCAcCGGC-GCCGUUa -3'
miRNA:   3'- -GGcUCGCGCgCCGUaGCCGgCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 39911 0.67 0.236177
Target:  5'- gCCGuAGCGCGCGaGgugucauuCGUCGGCgCGggcuUCGCCu -3'
miRNA:   3'- -GGC-UCGCGCGC-C--------GUAGCCG-GC----GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40761 0.67 0.236177
Target:  5'- gCCGuuGGCGCGCcGCG-C-GCCGCCgaGCCg -3'
miRNA:   3'- -GGC--UCGCGCGcCGUaGcCGGCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.