miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 13821 0.66 0.269521
Target:  5'- cCCG-GCGCGCGugagcgugccugaccGCAUCGucaucuucCCGCCGgCg -3'
miRNA:   3'- -GGCuCGCGCGC---------------CGUAGCc-------GGCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 8712 0.66 0.267573
Target:  5'- gCCGAGCGCaGCGcGCGcuaCGGgaaguucgaagaccaCGCCGCg -3'
miRNA:   3'- -GGCUCGCG-CGC-CGUa--GCCg--------------GCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 27342 0.66 0.266926
Target:  5'- gCGAGCaucagcucGgGCGGCAcgccugCGGCCugcGCgGCCu -3'
miRNA:   3'- gGCUCG--------CgCGCCGUa-----GCCGG---CGgCGG- -5'
28047 3' -64.2 NC_005887.1 + 40355 0.66 0.266926
Target:  5'- gCCGucgaGCGCGGC--CGuGCCGCuCGUCg -3'
miRNA:   3'- -GGCucg-CGCGCCGuaGC-CGGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 28132 0.66 0.266926
Target:  5'- gCCGAacaGCGCGGCgccgcccuGUCcgaGGCCG-CGCCc -3'
miRNA:   3'- -GGCUcg-CGCGCCG--------UAG---CCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 18377 0.66 0.266926
Target:  5'- aCG-GCGCGcCGGCGcUCgcgaacccgauGGCCuaCGCCg -3'
miRNA:   3'- gGCuCGCGC-GCCGU-AG-----------CCGGcgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 8501 0.66 0.266926
Target:  5'- cUCGAGUcgcguaacgGCGUGGCGUuccCGGgCGaaaCGCCg -3'
miRNA:   3'- -GGCUCG---------CGCGCCGUA---GCCgGCg--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 12539 0.66 0.266926
Target:  5'- gCCGAcaacuucaagGa-CGUGGCGUcgaCGGCCGCCGgCa -3'
miRNA:   3'- -GGCU----------CgcGCGCCGUA---GCCGGCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 13897 0.66 0.266926
Target:  5'- cUCGuGCGCGuCGGCAUucgUGGCaCGUaCGCg -3'
miRNA:   3'- -GGCuCGCGC-GCCGUA---GCCG-GCG-GCGg -5'
28047 3' -64.2 NC_005887.1 + 20545 0.66 0.266926
Target:  5'- cCCGgcAGCGcCGCGGaCGUCGuGuuGauGCCg -3'
miRNA:   3'- -GGC--UCGC-GCGCC-GUAGC-CggCggCGG- -5'
28047 3' -64.2 NC_005887.1 + 27990 0.66 0.266926
Target:  5'- cUCGGGCcgaauCGCGuCGUCGGCCGgCGUUu -3'
miRNA:   3'- -GGCUCGc----GCGCcGUAGCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 4280 0.66 0.264993
Target:  5'- cCCGAugaucGCGCGCGaggucgacauccucGCcgaggcCGGCCaGCUGCCg -3'
miRNA:   3'- -GGCU-----CGCGCGC--------------CGua----GCCGG-CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 27206 0.66 0.260527
Target:  5'- gUCGAGCGCcuGCauGGgGUCGGUCGgguccgugaCGCCg -3'
miRNA:   3'- -GGCUCGCG--CG--CCgUAGCCGGCg--------GCGG- -5'
28047 3' -64.2 NC_005887.1 + 11323 0.66 0.260527
Target:  5'- gCGAGCGcCGCaaccGCGaCGGCCGguaCGCUg -3'
miRNA:   3'- gGCUCGC-GCGc---CGUaGCCGGCg--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 4940 0.66 0.260527
Target:  5'- aCCuGGCGUGCaGGCAgUCGcGaCCGCgcagCGCCa -3'
miRNA:   3'- -GGcUCGCGCG-CCGU-AGC-C-GGCG----GCGG- -5'
28047 3' -64.2 NC_005887.1 + 40872 0.66 0.260527
Target:  5'- gCGAGCGCcgcacgccGuCGGCGUCGGgcucCUGCuCGCa -3'
miRNA:   3'- gGCUCGCG--------C-GCCGUAGCC----GGCG-GCGg -5'
28047 3' -64.2 NC_005887.1 + 8367 0.66 0.260527
Target:  5'- uUGAGCGUGauaCGGCGcCGGUgcugacggaCGCCGCa -3'
miRNA:   3'- gGCUCGCGC---GCCGUaGCCG---------GCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 37182 0.66 0.260527
Target:  5'- cUCGAcGCGUGCcaucaGCAUCaGCgGCgCGCCg -3'
miRNA:   3'- -GGCU-CGCGCGc----CGUAGcCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 5289 0.66 0.260527
Target:  5'- cCCGAgcaGCGCGCGGCGaaGuuCuaCGCCa -3'
miRNA:   3'- -GGCU---CGCGCGCCGUagCcgGcgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 32666 0.66 0.260527
Target:  5'- aCCGGugucGCGCGUGcGCGcuUCGGCaaCCGCg -3'
miRNA:   3'- -GGCU----CGCGCGC-CGU--AGCCGgcGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.