miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 1429 0.74 0.068495
Target:  5'- gCCGAacucggugcGCGCGCGGUAgcccuUCGGCgGCuCGUCg -3'
miRNA:   3'- -GGCU---------CGCGCGCCGU-----AGCCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 26402 0.74 0.068495
Target:  5'- gCG-GCGUGCGGCGcgUGGCCGgCGCa -3'
miRNA:   3'- gGCuCGCGCGCCGUa-GCCGGCgGCGg -5'
28047 3' -64.2 NC_005887.1 + 6916 0.74 0.072348
Target:  5'- gCCGAGCGaauccCGCaacucGGCAUgGGCCG-CGCCg -3'
miRNA:   3'- -GGCUCGC-----GCG-----CCGUAgCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 11810 0.74 0.072348
Target:  5'- aCGcuGCuGCGUGGCGucUCGGCCgacgGCCGCCu -3'
miRNA:   3'- gGCu-CG-CGCGCCGU--AGCCGG----CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 33472 0.74 0.074352
Target:  5'- gCGAGCGCGUacGGCGUCgcgaucucgacgGGCgCGCCGgCg -3'
miRNA:   3'- gGCUCGCGCG--CCGUAG------------CCG-GCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 17179 0.74 0.074352
Target:  5'- -gGAGCGCGCGaacgCGGCCGCaCGCg -3'
miRNA:   3'- ggCUCGCGCGCcguaGCCGGCG-GCGg -5'
28047 3' -64.2 NC_005887.1 + 1280 0.73 0.076409
Target:  5'- aCGAGCGCGCGG-AUCGuGuCCuUCGCCa -3'
miRNA:   3'- gGCUCGCGCGCCgUAGC-C-GGcGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 1482 0.73 0.076409
Target:  5'- gCCGAcgGCGUGCGGCGcUCGcGCggCGCgGCCg -3'
miRNA:   3'- -GGCU--CGCGCGCCGU-AGC-CG--GCGgCGG- -5'
28047 3' -64.2 NC_005887.1 + 34689 0.73 0.07852
Target:  5'- gUCGAGCaGCaGCGGg--CGGCCGUCGUCg -3'
miRNA:   3'- -GGCUCG-CG-CGCCguaGCCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 24930 0.73 0.07852
Target:  5'- aCGAGCGCGauGUucuUCGcCUGCCGCCg -3'
miRNA:   3'- gGCUCGCGCgcCGu--AGCcGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 2886 0.73 0.080688
Target:  5'- gCGcaGGCGaCGaCGGacaCGUCGGCCGCCGCg -3'
miRNA:   3'- gGC--UCGC-GC-GCC---GUAGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 14148 0.73 0.080688
Target:  5'- gCCGAGaCGCGCGGCGcugaugCGGC-GCacaGCCc -3'
miRNA:   3'- -GGCUC-GCGCGCCGUa-----GCCGgCGg--CGG- -5'
28047 3' -64.2 NC_005887.1 + 23986 0.73 0.082687
Target:  5'- cUCGAGCGCgagGCGGCGcUCGGgaaucucCUGCCGCa -3'
miRNA:   3'- -GGCUCGCG---CGCCGU-AGCC-------GGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 15925 0.73 0.087537
Target:  5'- gCUGcAGCGCGCGuucccGCG-CGGCCGCCaGCUc -3'
miRNA:   3'- -GGC-UCGCGCGC-----CGUaGCCGGCGG-CGG- -5'
28047 3' -64.2 NC_005887.1 + 8456 0.73 0.088491
Target:  5'- cCCGAGCacgacgaccaauacgGCGaCGGagcgcuGUCGGCUGCCGCa -3'
miRNA:   3'- -GGCUCG---------------CGC-GCCg-----UAGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 11423 0.72 0.092408
Target:  5'- gCCGAGCGCGCuGuGCAcaaGGCgaUGCCGCg -3'
miRNA:   3'- -GGCUCGCGCG-C-CGUag-CCG--GCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 15613 0.72 0.092408
Target:  5'- aCGGGCGuCGCGcaGCAggCGGCCGggcUCGCCg -3'
miRNA:   3'- gGCUCGC-GCGC--CGUa-GCCGGC---GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 15691 0.72 0.094938
Target:  5'- aCCGc-CGCGCGGC--CGGaugauuCCGCCGCCg -3'
miRNA:   3'- -GGCucGCGCGCCGuaGCC------GGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 15199 0.72 0.094938
Target:  5'- cCCGcGCcCGUGGCcguUCGGCCGCgugauCGCCg -3'
miRNA:   3'- -GGCuCGcGCGCCGu--AGCCGGCG-----GCGG- -5'
28047 3' -64.2 NC_005887.1 + 37090 0.72 0.097534
Target:  5'- aCCGaAGCGgGCgagcacagccucGGCGaucgcgCGGCCGUCGCCc -3'
miRNA:   3'- -GGC-UCGCgCG------------CCGUa-----GCCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.