miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 17469 1.12 0.000072
Target:  5'- aCCGAGCGCGCGGCAUCGGCCGCCGCCu -3'
miRNA:   3'- -GGCUCGCGCGCCGUAGCCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 6033 0.9 0.003914
Target:  5'- aUCGAGUGCGCGGCGUCGaCCGCCGCg -3'
miRNA:   3'- -GGCUCGCGCGCCGUAGCcGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 39639 0.8 0.023178
Target:  5'- uCCGucGuCGCGCGGC-UCGGCCGCuUGCCg -3'
miRNA:   3'- -GGCu-C-GCGCGCCGuAGCCGGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 14597 0.78 0.033349
Target:  5'- gCCG-GCGCGCucGGCAUCGGCCacuuCCGUCu -3'
miRNA:   3'- -GGCuCGCGCG--CCGUAGCCGGc---GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 7003 0.77 0.03823
Target:  5'- gCCGGGCGUgaagcucGUGGC--CGGCCGCCGCg -3'
miRNA:   3'- -GGCUCGCG-------CGCCGuaGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 37325 0.77 0.03823
Target:  5'- gUCGcAGCaGCGCcggcacuGGCAUCGGUCGCCGCa -3'
miRNA:   3'- -GGC-UCG-CGCG-------CCGUAGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 36921 0.77 0.040193
Target:  5'- gCGGGCGCGUGGUcgCGccggucgcugcggcGCCGCcCGCCg -3'
miRNA:   3'- gGCUCGCGCGCCGuaGC--------------CGGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 17969 0.77 0.04053
Target:  5'- gCGGGCuCGcCGGCAUCGGCCGCa-CCg -3'
miRNA:   3'- gGCUCGcGC-GCCGUAGCCGGCGgcGG- -5'
28047 3' -64.2 NC_005887.1 + 27035 0.77 0.041672
Target:  5'- gCGAGCGCGCGaCcgCGcacGCUGCCGCCc -3'
miRNA:   3'- gGCUCGCGCGCcGuaGC---CGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 13396 0.76 0.045292
Target:  5'- gCCG-GCGCgGCGGaCGUCGGCggcaaGCCGCUg -3'
miRNA:   3'- -GGCuCGCG-CGCC-GUAGCCGg----CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 620 0.76 0.045292
Target:  5'- cCCGcGCGC-CGGgAUCGGaUCGCCGCCc -3'
miRNA:   3'- -GGCuCGCGcGCCgUAGCC-GGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 29759 0.76 0.045292
Target:  5'- gCCGAGCGuCGCGGCcggGUCGGCggacaccaugCGCaUGCCg -3'
miRNA:   3'- -GGCUCGC-GCGCCG---UAGCCG----------GCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 25002 0.76 0.049217
Target:  5'- gCCGAGCGUcaGCucGCGcCGGCgGCCGCCg -3'
miRNA:   3'- -GGCUCGCG--CGc-CGUaGCCGgCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 743 0.76 0.053473
Target:  5'- aCGGGcCGCGcCGGCcgCcgcaccugGGCCGCCGCUg -3'
miRNA:   3'- gGCUC-GCGC-GCCGuaG--------CCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 18801 0.75 0.058086
Target:  5'- gCGAuGCGgGCGGCGUCaGCguaCGCUGCCa -3'
miRNA:   3'- gGCU-CGCgCGCCGUAGcCG---GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 13615 0.75 0.058086
Target:  5'- gCUG-GCaGCGCGGCGcgCGGCgGCCGCa -3'
miRNA:   3'- -GGCuCG-CGCGCCGUa-GCCGgCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 25518 0.75 0.061373
Target:  5'- gCGGGUG-GCGGCAUaaucGUCGCCGCCg -3'
miRNA:   3'- gGCUCGCgCGCCGUAgc--CGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 26402 0.74 0.068495
Target:  5'- gCG-GCGUGCGGCGcgUGGCCGgCGCa -3'
miRNA:   3'- gGCuCGCGCGCCGUa-GCCGGCgGCGg -5'
28047 3' -64.2 NC_005887.1 + 1429 0.74 0.068495
Target:  5'- gCCGAacucggugcGCGCGCGGUAgcccuUCGGCgGCuCGUCg -3'
miRNA:   3'- -GGCU---------CGCGCGCCGU-----AGCCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 40241 0.74 0.068495
Target:  5'- gCCGAGCGaCGgcuuCGGCAauauguUCGuGCUGCCGCUg -3'
miRNA:   3'- -GGCUCGC-GC----GCCGU------AGC-CGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.