miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 335 0.7 0.149241
Target:  5'- aUCGcGCGcCGCGGCgacacucgacGUgGGCCGCagGCCg -3'
miRNA:   3'- -GGCuCGC-GCGCCG----------UAgCCGGCGg-CGG- -5'
28047 3' -64.2 NC_005887.1 + 512 0.67 0.213765
Target:  5'- aCGAGUaucugGuCGaucugaacGCGUCGGCCGCCGCg -3'
miRNA:   3'- gGCUCG-----C-GCgc------CGUAGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 620 0.76 0.045292
Target:  5'- cCCGcGCGC-CGGgAUCGGaUCGCCGCCc -3'
miRNA:   3'- -GGCuCGCGcGCCgUAGCC-GGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 634 0.68 0.20793
Target:  5'- gCCGcgaugaaAGCGCGCGGCGagCGcacgcgcauGaCCGCCGaCCa -3'
miRNA:   3'- -GGC-------UCGCGCGCCGUa-GC---------C-GGCGGC-GG- -5'
28047 3' -64.2 NC_005887.1 + 743 0.76 0.053473
Target:  5'- aCGGGcCGCGcCGGCcgCcgcaccugGGCCGCCGCUg -3'
miRNA:   3'- gGCUC-GCGC-GCCGuaG--------CCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 821 0.66 0.277427
Target:  5'- gCCGAGCGCcucGCGGaucuugccgagcacCGUCGacuugccguucgaGCCGgUGCCa -3'
miRNA:   3'- -GGCUCGCG---CGCC--------------GUAGC-------------CGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 865 0.67 0.230396
Target:  5'- cCCGuGGaCGCGUGGCc-CGcGCCGCCGg- -3'
miRNA:   3'- -GGC-UC-GCGCGCCGuaGC-CGGCGGCgg -5'
28047 3' -64.2 NC_005887.1 + 1280 0.73 0.076409
Target:  5'- aCGAGCGCGCGG-AUCGuGuCCuUCGCCa -3'
miRNA:   3'- gGCUCGCGCGCCgUAGC-C-GGcGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 1429 0.74 0.068495
Target:  5'- gCCGAacucggugcGCGCGCGGUAgcccuUCGGCgGCuCGUCg -3'
miRNA:   3'- -GGCU---------CGCGCGCCGU-----AGCCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 1482 0.73 0.076409
Target:  5'- gCCGAcgGCGUGCGGCGcUCGcGCggCGCgGCCg -3'
miRNA:   3'- -GGCU--CGCGCGCCGU-AGC-CG--GCGgCGG- -5'
28047 3' -64.2 NC_005887.1 + 1490 0.67 0.219191
Target:  5'- uUCGAcGCGCGCGGC---GGCU-UCGCCg -3'
miRNA:   3'- -GGCU-CGCGCGCCGuagCCGGcGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 1583 0.67 0.224174
Target:  5'- gCCGgcucggcGGCGCGCGGCGcgccaaCGGCgaUCGCCu -3'
miRNA:   3'- -GGC-------UCGCGCGCCGUa-----GCCGgcGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 1811 0.68 0.198175
Target:  5'- gCGAGCGCcagacCGuCGUCGcuGCCGCgCGCCg -3'
miRNA:   3'- gGCUCGCGc----GCcGUAGC--CGGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 1939 0.67 0.213765
Target:  5'- cUCGAGUuCGacCGGCAcgUCGGCCG-UGCCg -3'
miRNA:   3'- -GGCUCGcGC--GCCGU--AGCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 1984 0.71 0.120841
Target:  5'- cUCGcGCGCGaCGGCGgcaCGGCCG-CGCUc -3'
miRNA:   3'- -GGCuCGCGC-GCCGUa--GCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 2209 0.67 0.213765
Target:  5'- gCGAGCGCgGCGcGCAgcgCGcaCCGCaCGCUg -3'
miRNA:   3'- gGCUCGCG-CGC-CGUa--GCc-GGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 2311 0.68 0.198175
Target:  5'- aUCGGGCGUa-GGC--CGGCCGCCucgaGCCg -3'
miRNA:   3'- -GGCUCGCGcgCCGuaGCCGGCGG----CGG- -5'
28047 3' -64.2 NC_005887.1 + 2693 0.69 0.174395
Target:  5'- gUGaAGCGUacggGCGGCAagCGGCCgaGCCGCg -3'
miRNA:   3'- gGC-UCGCG----CGCCGUa-GCCGG--CGGCGg -5'
28047 3' -64.2 NC_005887.1 + 2886 0.73 0.080688
Target:  5'- gCGcaGGCGaCGaCGGacaCGUCGGCCGCCGCg -3'
miRNA:   3'- gGC--UCGC-GC-GCC---GUAGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 3614 0.68 0.208455
Target:  5'- gCCaGGcCGCGCaGCGcuUCGGCCGUgaaaaccuguCGCCg -3'
miRNA:   3'- -GGcUC-GCGCGcCGU--AGCCGGCG----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.