miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 42080 0.66 0.254254
Target:  5'- aCGAGCGCuGUcGCGUgGGgCGCgaUGCCg -3'
miRNA:   3'- gGCUCGCG-CGcCGUAgCCgGCG--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 41941 0.66 0.278094
Target:  5'- gCUGAGCugcccggcgugcucGCGUGGUgcgugcgCGGCgCGCuCGCCu -3'
miRNA:   3'- -GGCUCG--------------CGCGCCGua-----GCCG-GCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 41940 0.68 0.183586
Target:  5'- gCGGGCgGCGCGGCGcgucuUCGcGgCGCUuGCCc -3'
miRNA:   3'- gGCUCG-CGCGCCGU-----AGC-CgGCGG-CGG- -5'
28047 3' -64.2 NC_005887.1 + 41814 0.7 0.141617
Target:  5'- uCCGgcgcGGCGCGCGGC---GGCCGaCGCg -3'
miRNA:   3'- -GGC----UCGCGCGCCGuagCCGGCgGCGg -5'
28047 3' -64.2 NC_005887.1 + 41576 0.67 0.213765
Target:  5'- gCCGAGaCGUuccugucggccaGCGGCGgcccaggugCGGCgGCCGgCg -3'
miRNA:   3'- -GGCUC-GCG------------CGCCGUa--------GCCGgCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 41444 0.69 0.161377
Target:  5'- gUGGGCuauGCGCuGC-UCGGCaCGCCGCg -3'
miRNA:   3'- gGCUCG---CGCGcCGuAGCCG-GCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 41343 0.69 0.174395
Target:  5'- gCCGguguacAGCGCGC-GCA-CGGCgGCCGgCa -3'
miRNA:   3'- -GGC------UCGCGCGcCGUaGCCGgCGGCgG- -5'
28047 3' -64.2 NC_005887.1 + 41291 0.68 0.198175
Target:  5'- aCGGGCGCGCuGCu---GCCGCCGg- -3'
miRNA:   3'- gGCUCGCGCGcCGuagcCGGCGGCgg -5'
28047 3' -64.2 NC_005887.1 + 41231 0.69 0.156827
Target:  5'- aCCGAGCucgacaagcacacGCaccugcuCGGCGUCGGCaauggCGCCGUCg -3'
miRNA:   3'- -GGCUCG-------------CGc------GCCGUAGCCG-----GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40872 0.66 0.260527
Target:  5'- gCGAGCGCcgcacgccGuCGGCGUCGGgcucCUGCuCGCa -3'
miRNA:   3'- gGCUCGCG--------C-GCCGUAGCC----GGCG-GCGg -5'
28047 3' -64.2 NC_005887.1 + 40841 0.66 0.273451
Target:  5'- uCCGGGUaCGUGuuccGCA-CGGCCG-CGCCg -3'
miRNA:   3'- -GGCUCGcGCGC----CGUaGCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40761 0.67 0.236177
Target:  5'- gCCGuuGGCGCGCcGCG-C-GCCGCCgaGCCg -3'
miRNA:   3'- -GGC--UCGCGCGcCGUaGcCGGCGG--CGG- -5'
28047 3' -64.2 NC_005887.1 + 40687 0.71 0.124095
Target:  5'- aCCuGGCGCGCGcGCA-CGGCUgGCaggaGCCg -3'
miRNA:   3'- -GGcUCGCGCGC-CGUaGCCGG-CGg---CGG- -5'
28047 3' -64.2 NC_005887.1 + 40651 0.72 0.100197
Target:  5'- aCGAGCGCGCGccgauCAcCGGCCGCa-CCa -3'
miRNA:   3'- gGCUCGCGCGCc----GUaGCCGGCGgcGG- -5'
28047 3' -64.2 NC_005887.1 + 40528 0.7 0.149241
Target:  5'- aCGcGGCGCGCGGCAgcgacgaCGGuCUGgCGCUc -3'
miRNA:   3'- gGC-UCGCGCGCCGUa------GCC-GGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40355 0.66 0.266926
Target:  5'- gCCGucgaGCGCGGC--CGuGCCGCuCGUCg -3'
miRNA:   3'- -GGCucg-CGCGCCGuaGC-CGGCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 40241 0.74 0.068495
Target:  5'- gCCGAGCGaCGgcuuCGGCAauauguUCGuGCUGCCGCUg -3'
miRNA:   3'- -GGCUCGC-GC----GCCGU------AGC-CGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40171 0.67 0.230396
Target:  5'- gUGAgcuGCGCGaCGGCAcgaaGGgaaUCGCCGCCg -3'
miRNA:   3'- gGCU---CGCGC-GCCGUag--CC---GGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40168 0.66 0.254254
Target:  5'- cCCGAucacCGCGgcCGGCGUCaGGCCGaaguccaUGCCg -3'
miRNA:   3'- -GGCUc---GCGC--GCCGUAG-CCGGCg------GCGG- -5'
28047 3' -64.2 NC_005887.1 + 40118 0.7 0.145383
Target:  5'- gCCGcaggacgccuacAGCGUGCGGUG-CGcGCUGCgCGCCg -3'
miRNA:   3'- -GGC------------UCGCGCGCCGUaGC-CGGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.