miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 4280 0.66 0.264993
Target:  5'- cCCGAugaucGCGCGCGaggucgacauccucGCcgaggcCGGCCaGCUGCCg -3'
miRNA:   3'- -GGCU-----CGCGCGC--------------CGua----GCCGG-CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 4490 0.69 0.153191
Target:  5'- gCCGAacgGCGCGC-GCAUCGcGCgucUGCuCGCCg -3'
miRNA:   3'- -GGCU---CGCGCGcCGUAGC-CG---GCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 4622 0.72 0.10573
Target:  5'- ---cGC-CGCGGCGcCGGUgGCCGCCg -3'
miRNA:   3'- ggcuCGcGCGCCGUaGCCGgCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 4940 0.66 0.260527
Target:  5'- aCCuGGCGUGCaGGCAgUCGcGaCCGCgcagCGCCa -3'
miRNA:   3'- -GGcUCGCGCG-CCGU-AGC-C-GGCG----GCGG- -5'
28047 3' -64.2 NC_005887.1 + 5139 0.69 0.153191
Target:  5'- aUGAcCGCGCuGCccgacGUCGGCgCGCCGCUg -3'
miRNA:   3'- gGCUcGCGCGcCG-----UAGCCG-GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 5289 0.66 0.260527
Target:  5'- cCCGAgcaGCGCGCGGCGaaGuuCuaCGCCa -3'
miRNA:   3'- -GGCU---CGCGCGCCGUagCcgGcgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 5410 0.7 0.148851
Target:  5'- aCCG-GCGgGCGGCGccgcagcgacCGGCgcgaccaCGCCGCCc -3'
miRNA:   3'- -GGCuCGCgCGCCGUa---------GCCG-------GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 5486 0.68 0.198175
Target:  5'- gCCGAugGCGCaGCAcCGGCCGCagcaccgGCCg -3'
miRNA:   3'- -GGCUcgCGCGcCGUaGCCGGCGg------CGG- -5'
28047 3' -64.2 NC_005887.1 + 5604 0.67 0.24208
Target:  5'- aCCu-GcCGCGCGGCAUCGGCaCGauuaacaucguuUCGCa -3'
miRNA:   3'- -GGcuC-GCGCGCCGUAGCCG-GC------------GGCGg -5'
28047 3' -64.2 NC_005887.1 + 6033 0.9 0.003914
Target:  5'- aUCGAGUGCGCGGCGUCGaCCGCCGCg -3'
miRNA:   3'- -GGCUCGCGCGCCGUAGCcGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 6301 0.69 0.153191
Target:  5'- gCGAGCGCGUcgaGGCcuugCGccucGCCGgCGCCg -3'
miRNA:   3'- gGCUCGCGCG---CCGua--GC----CGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 6467 0.67 0.213765
Target:  5'- cCUGAaguacGgGCGCGGCGUCGcGgUGuCUGCCg -3'
miRNA:   3'- -GGCU-----CgCGCGCCGUAGC-CgGC-GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 6639 0.68 0.193203
Target:  5'- aCCGAGCugcacGCGUGGaucUCGgaaaccgcgaaGCCgGCCGCCg -3'
miRNA:   3'- -GGCUCG-----CGCGCCgu-AGC-----------CGG-CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 6916 0.74 0.072348
Target:  5'- gCCGAGCGaauccCGCaacucGGCAUgGGCCG-CGCCg -3'
miRNA:   3'- -GGCUCGC-----GCG-----CCGUAgCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 6957 0.68 0.188341
Target:  5'- gCCGuGCGCGgGcGCAUCGaGCaugaGCUGUg -3'
miRNA:   3'- -GGCuCGCGCgC-CGUAGC-CGg---CGGCGg -5'
28047 3' -64.2 NC_005887.1 + 7003 0.77 0.03823
Target:  5'- gCCGGGCGUgaagcucGUGGC--CGGCCGCCGCg -3'
miRNA:   3'- -GGCUCGCG-------CGCCGuaGCCGGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 7190 0.71 0.111548
Target:  5'- gCCGAGauCGUGCaGCGUgaCGGCCGCCcguccguggcGCCg -3'
miRNA:   3'- -GGCUC--GCGCGcCGUA--GCCGGCGG----------CGG- -5'
28047 3' -64.2 NC_005887.1 + 7262 0.71 0.127431
Target:  5'- cUCGgcAGCGacCGCGaCAUCGGCCccgGCCGCCc -3'
miRNA:   3'- -GGC--UCGC--GCGCcGUAGCCGG---CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 7649 0.67 0.236177
Target:  5'- aCCGcaaGCGCGaCGaCGGCCGcCCGCUg -3'
miRNA:   3'- -GGCucgCGCGCcGUaGCCGGC-GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 7994 0.66 0.254254
Target:  5'- gCgGGGCGCuCGucuccaGCcgUGGCCGgCGCCa -3'
miRNA:   3'- -GgCUCGCGcGC------CGuaGCCGGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.