Results 21 - 40 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28047 | 3' | -64.2 | NC_005887.1 | + | 8501 | 0.66 | 0.266926 |
Target: 5'- cUCGAGUcgcguaacgGCGUGGCGUuccCGGgCGaaaCGCCg -3' miRNA: 3'- -GGCUCG---------CGCGCCGUA---GCCgGCg--GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12539 | 0.66 | 0.266926 |
Target: 5'- gCCGAcaacuucaagGa-CGUGGCGUcgaCGGCCGCCGgCa -3' miRNA: 3'- -GGCU----------CgcGCGCCGUA---GCCGGCGGCgG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 32837 | 0.66 | 0.273451 |
Target: 5'- gUGAGCGUGacgacgguguuCGGCAgcaugccggggUCGGCCgggucguucGUCGCCa -3' miRNA: 3'- gGCUCGCGC-----------GCCGU-----------AGCCGG---------CGGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12309 | 0.66 | 0.286884 |
Target: 5'- gCUG-GCGCucgccuaugaggGUGGCGUCGGCgCGuUCGUCa -3' miRNA: 3'- -GGCuCGCG------------CGCCGUAGCCG-GC-GGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 34648 | 0.66 | 0.286884 |
Target: 5'- aCGAgGCGCGcCGGCuugcCGGuuuCCGgauCCGCCa -3' miRNA: 3'- gGCU-CGCGC-GCCGua--GCC---GGC---GGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 28132 | 0.66 | 0.266926 |
Target: 5'- gCCGAacaGCGCGGCgccgcccuGUCcgaGGCCG-CGCCc -3' miRNA: 3'- -GGCUcg-CGCGCCG--------UAG---CCGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 9139 | 0.66 | 0.286884 |
Target: 5'- aCCGAGUGCcaguGCGGCGcguUCaucuggacgGGCUcguccgGCCGCUa -3' miRNA: 3'- -GGCUCGCG----CGCCGU---AG---------CCGG------CGGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 24539 | 0.66 | 0.280104 |
Target: 5'- ----aCGCGCGGCcgcaccuUCGGCCgGgCGCCc -3' miRNA: 3'- ggcucGCGCGCCGu------AGCCGG-CgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 15623 | 0.66 | 0.286884 |
Target: 5'- aUCGuGCGCcCGGUcuauGUCGaGCUGCCcgcgGCCg -3' miRNA: 3'- -GGCuCGCGcGCCG----UAGC-CGGCGG----CGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 4940 | 0.66 | 0.260527 |
Target: 5'- aCCuGGCGUGCaGGCAgUCGcGaCCGCgcagCGCCa -3' miRNA: 3'- -GGcUCGCGCG-CCGU-AGC-C-GGCG----GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 27418 | 0.66 | 0.280104 |
Target: 5'- aCGgcAGCGCGCGGCGUgcGUCGaUCGCg -3' miRNA: 3'- gGC--UCGCGCGCCGUAgcCGGC-GGCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 40872 | 0.66 | 0.260527 |
Target: 5'- gCGAGCGCcgcacgccGuCGGCGUCGGgcucCUGCuCGCa -3' miRNA: 3'- gGCUCGCG--------C-GCCGUAGCC----GGCG-GCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 20545 | 0.66 | 0.266926 |
Target: 5'- cCCGgcAGCGcCGCGGaCGUCGuGuuGauGCCg -3' miRNA: 3'- -GGC--UCGC-GCGCC-GUAGC-CggCggCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 13821 | 0.66 | 0.269521 |
Target: 5'- cCCG-GCGCGCGugagcgugccugaccGCAUCGucaucuucCCGCCGgCg -3' miRNA: 3'- -GGCuCGCGCGC---------------CGUAGCc-------GGCGGCgG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 23444 | 0.66 | 0.280104 |
Target: 5'- gUGAGCGCuGCGGg--CuGCCGgUGCCg -3' miRNA: 3'- gGCUCGCG-CGCCguaGcCGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 40841 | 0.66 | 0.273451 |
Target: 5'- uCCGGGUaCGUGuuccGCA-CGGCCG-CGCCg -3' miRNA: 3'- -GGCUCGcGCGC----CGUaGCCGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 8712 | 0.66 | 0.267573 |
Target: 5'- gCCGAGCGCaGCGcGCGcuaCGGgaaguucgaagaccaCGCCGCg -3' miRNA: 3'- -GGCUCGCG-CGC-CGUa--GCCg--------------GCGGCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12657 | 0.66 | 0.248105 |
Target: 5'- aCGAGUGgGuCGGCgAUUuGCCGCCGaCg -3' miRNA: 3'- gGCUCGCgC-GCCG-UAGcCGGCGGCgG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 42080 | 0.66 | 0.254254 |
Target: 5'- aCGAGCGCuGUcGCGUgGGgCGCgaUGCCg -3' miRNA: 3'- gGCUCGCG-CGcCGUAgCCgGCG--GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 30637 | 0.66 | 0.286884 |
Target: 5'- gCCGuGCGCGCGGCGaagCGaucUUGCgaCGCCu -3' miRNA: 3'- -GGCuCGCGCGCCGUa--GCc--GGCG--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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