miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 5' -55.6 NC_005887.1 + 39532 0.67 0.529367
Target:  5'- ----aCUGG-CGCCGGCUcuguaccccaaUCCGCGCGa -3'
miRNA:   3'- uacugGACUaGCGGCUGA-----------AGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 15207 0.67 0.518586
Target:  5'- cGUGGCCguucggccgcgUGAUCGCCGACgagUCG-ACGa -3'
miRNA:   3'- -UACUGG-----------ACUAGCGGCUGaa-GGCgUGC- -5'
28047 5' -55.6 NC_005887.1 + 9852 0.68 0.497296
Target:  5'- --aACCUGAaCGCCG-CgcgCCGCACa -3'
miRNA:   3'- uacUGGACUaGCGGCuGaa-GGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 33489 0.68 0.476406
Target:  5'- -cGuaauCCgGAUCGCCGuucaGCaUCCGCGCGa -3'
miRNA:   3'- uaCu---GGaCUAGCGGC----UGaAGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 745 0.68 0.466126
Target:  5'- -gGGCCg---CGCCGGCcgCCGCACc -3'
miRNA:   3'- uaCUGGacuaGCGGCUGaaGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 17809 0.69 0.455962
Target:  5'- -gGGgCUGAUCGCCGAgUcgcUCgaGCACGg -3'
miRNA:   3'- uaCUgGACUAGCGGCUgA---AGg-CGUGC- -5'
28047 5' -55.6 NC_005887.1 + 37065 0.69 0.435999
Target:  5'- -cGGCCUucUCGCUGACggcgUUCGCACc -3'
miRNA:   3'- uaCUGGAcuAGCGGCUGa---AGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 12955 0.7 0.388395
Target:  5'- --aGCCUGAUCG-CGACcgcgCCGCAUGg -3'
miRNA:   3'- uacUGGACUAGCgGCUGaa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 25627 0.7 0.379292
Target:  5'- -cGACUUGAUcgCGCCGGCcgUCaCGUACGu -3'
miRNA:   3'- uaCUGGACUA--GCGGCUGa-AG-GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 42057 0.7 0.379292
Target:  5'- -gGACCUGcUCGCCGACUggaUCgacgaGCGCu -3'
miRNA:   3'- uaCUGGACuAGCGGCUGA---AGg----CGUGc -5'
28047 5' -55.6 NC_005887.1 + 5356 0.71 0.352852
Target:  5'- -cGGCCUGcgcgugcUCGCCGGCgagcucgacCCGCGCGa -3'
miRNA:   3'- uaCUGGACu------AGCGGCUGaa-------GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 30231 0.71 0.335964
Target:  5'- -cGGCCUGcUCGUCcuggcGCUUCUGCGCGg -3'
miRNA:   3'- uaCUGGACuAGCGGc----UGAAGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 25854 0.71 0.331014
Target:  5'- -cGGCCUGcgacAUCGCCGACcagcccgccggauccUgCCGCGCGg -3'
miRNA:   3'- uaCUGGAC----UAGCGGCUG---------------AaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 3080 0.72 0.303982
Target:  5'- -aGGCgCUGAaCGCCGACcacggCCGCAUGa -3'
miRNA:   3'- uaCUG-GACUaGCGGCUGaa---GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 23493 0.72 0.303982
Target:  5'- uUGAUCUGcUUGCCGACguguucggCCGCGCu -3'
miRNA:   3'- uACUGGACuAGCGGCUGaa------GGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 4232 0.72 0.303982
Target:  5'- -cGugCUGcucgCGCCGACgcucggCCGCACGc -3'
miRNA:   3'- uaCugGACua--GCGGCUGaa----GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 525 0.72 0.281567
Target:  5'- -cGAUCUGAacgCGUCGGCcgCCGCGCGc -3'
miRNA:   3'- uaCUGGACUa--GCGGCUGaaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 17505 1.07 0.000862
Target:  5'- aAUGACCUGAUCGCCGACUUCCGCACGa -3'
miRNA:   3'- -UACUGGACUAGCGGCUGAAGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.