miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 5' -55.6 NC_005887.1 + 15207 0.67 0.518586
Target:  5'- cGUGGCCguucggccgcgUGAUCGCCGACgagUCG-ACGa -3'
miRNA:   3'- -UACUGG-----------ACUAGCGGCUGaa-GGCgUGC- -5'
28047 5' -55.6 NC_005887.1 + 745 0.68 0.466126
Target:  5'- -gGGCCg---CGCCGGCcgCCGCACc -3'
miRNA:   3'- uaCUGGacuaGCGGCUGaaGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 12955 0.7 0.388395
Target:  5'- --aGCCUGAUCG-CGACcgcgCCGCAUGg -3'
miRNA:   3'- uacUGGACUAGCgGCUGaa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 25627 0.7 0.379292
Target:  5'- -cGACUUGAUcgCGCCGGCcgUCaCGUACGu -3'
miRNA:   3'- uaCUGGACUA--GCGGCUGa-AG-GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 5356 0.71 0.352852
Target:  5'- -cGGCCUGcgcgugcUCGCCGGCgagcucgacCCGCGCGa -3'
miRNA:   3'- uaCUGGACu------AGCGGCUGaa-------GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 30231 0.71 0.335964
Target:  5'- -cGGCCUGcUCGUCcuggcGCUUCUGCGCGg -3'
miRNA:   3'- uaCUGGACuAGCGGc----UGAAGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 25854 0.71 0.331014
Target:  5'- -cGGCCUGcgacAUCGCCGACcagcccgccggauccUgCCGCGCGg -3'
miRNA:   3'- uaCUGGAC----UAGCGGCUG---------------AaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 28949 0.67 0.529367
Target:  5'- -cGGCUUGc-CGCCGACgUCCGcCGCGc -3'
miRNA:   3'- uaCUGGACuaGCGGCUGaAGGC-GUGC- -5'
28047 5' -55.6 NC_005887.1 + 5245 0.67 0.544595
Target:  5'- -cGGCCgcgcGAUCGCCGaggcugugcucgcccGCUUCgGUGCGa -3'
miRNA:   3'- uaCUGGa---CUAGCGGC---------------UGAAGgCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 25785 0.67 0.551165
Target:  5'- -gGGCCcGGUCGagauCGGCUUCgUGCACGa -3'
miRNA:   3'- uaCUGGaCUAGCg---GCUGAAG-GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 27739 0.66 0.58434
Target:  5'- -cGcCCUcGAcggCGCCGACggCCGUACGc -3'
miRNA:   3'- uaCuGGA-CUa--GCGGCUGaaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 8539 0.66 0.595493
Target:  5'- -cGACCUGAcacccgcguggUgGCCGugggUCCGCGCu -3'
miRNA:   3'- uaCUGGACU-----------AgCGGCuga-AGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 6932 0.66 0.595493
Target:  5'- -cGACCUGAucgacUCGUgGGCgaaggCCGUGCGc -3'
miRNA:   3'- uaCUGGACU-----AGCGgCUGaa---GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 30271 0.66 0.595493
Target:  5'- gGUGACCUGAccgagcgacgUGCCGACcugCUGCAgCGc -3'
miRNA:   3'- -UACUGGACUa---------GCGGCUGaa-GGCGU-GC- -5'
28047 5' -55.6 NC_005887.1 + 9919 0.66 0.617886
Target:  5'- --aACCUGAUCGCCGcCggccacaucgCCGC-CGg -3'
miRNA:   3'- uacUGGACUAGCGGCuGaa--------GGCGuGC- -5'
28047 5' -55.6 NC_005887.1 + 34375 0.66 0.617886
Target:  5'- -cGACgUGAuucgcuugUCGCCGAuCUUCgucagCGCGCGg -3'
miRNA:   3'- uaCUGgACU--------AGCGGCU-GAAG-----GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 8827 0.66 0.640331
Target:  5'- -aGGCgCucacggUGAUCGCCGACaagaUCGCGCGg -3'
miRNA:   3'- uaCUG-G------ACUAGCGGCUGaa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 17505 1.07 0.000862
Target:  5'- aAUGACCUGAUCGCCGACUUCCGCACGa -3'
miRNA:   3'- -UACUGGACUAGCGGCUGAAGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.