Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28047 | 5' | -55.6 | NC_005887.1 | + | 525 | 0.72 | 0.281567 |
Target: 5'- -cGAUCUGAacgCGUCGGCcgCCGCGCGc -3' miRNA: 3'- uaCUGGACUa--GCGGCUGaaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 975 | 0.67 | 0.540229 |
Target: 5'- -cGAggUGAUCGCCGACa--CGCGCa -3' miRNA: 3'- uaCUggACUAGCGGCUGaagGCGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 14656 | 0.67 | 0.561065 |
Target: 5'- -gGugCUGcccGUCGCCGguucgacGCUgccCCGCACGa -3' miRNA: 3'- uaCugGAC---UAGCGGC-------UGAa--GGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 4890 | 0.67 | 0.562168 |
Target: 5'- -cGACgaUGGUCGCCGAgggCCgGCGCGa -3' miRNA: 3'- uaCUGg-ACUAGCGGCUgaaGG-CGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 13506 | 0.67 | 0.573229 |
Target: 5'- -cGACgaGGUCGCCGGCacgggcaUGCGCGc -3' miRNA: 3'- uaCUGgaCUAGCGGCUGaag----GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 262 | 0.66 | 0.617886 |
Target: 5'- -cGACCUGAU-GCCGAaagacgUgGCGCGg -3' miRNA: 3'- uaCUGGACUAgCGGCUgaa---GgCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 2506 | 0.66 | 0.617886 |
Target: 5'- -cGGCCUGcUCGugcacCCgGACUgCCGCACGc -3' miRNA: 3'- uaCUGGACuAGC-----GG-CUGAaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 9997 | 0.66 | 0.629107 |
Target: 5'- -gGACgUcacgaaGAUCGCCGACcacaUCaCGCGCGg -3' miRNA: 3'- uaCUGgA------CUAGCGGCUGa---AG-GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 35743 | 0.66 | 0.639209 |
Target: 5'- cGUGGCCcacUCGCuCGGCUUCucguucaCGCGCGg -3' miRNA: 3'- -UACUGGacuAGCG-GCUGAAG-------GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 29102 | 0.67 | 0.539139 |
Target: 5'- uGUGACCgucGGUCgcgacgaGCCGGgUUUCGUACGg -3' miRNA: 3'- -UACUGGa--CUAG-------CGGCUgAAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 39532 | 0.67 | 0.529367 |
Target: 5'- ----aCUGG-CGCCGGCUcuguaccccaaUCCGCGCGa -3' miRNA: 3'- uacugGACUaGCGGCUGA-----------AGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 26407 | 0.67 | 0.529367 |
Target: 5'- -gGuuCUGGUCgaGCUGGCggCCGCGCGg -3' miRNA: 3'- uaCugGACUAG--CGGCUGaaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 3080 | 0.72 | 0.303982 |
Target: 5'- -aGGCgCUGAaCGCCGACcacggCCGCAUGa -3' miRNA: 3'- uaCUG-GACUaGCGGCUGaa---GGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 23493 | 0.72 | 0.303982 |
Target: 5'- uUGAUCUGcUUGCCGACguguucggCCGCGCu -3' miRNA: 3'- uACUGGACuAGCGGCUGaa------GGCGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 4232 | 0.72 | 0.303982 |
Target: 5'- -cGugCUGcucgCGCCGACgcucggCCGCACGc -3' miRNA: 3'- uaCugGACua--GCGGCUGaa----GGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 42057 | 0.7 | 0.379292 |
Target: 5'- -gGACCUGcUCGCCGACUggaUCgacgaGCGCu -3' miRNA: 3'- uaCUGGACuAGCGGCUGA---AGg----CGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 37065 | 0.69 | 0.435999 |
Target: 5'- -cGGCCUucUCGCUGACggcgUUCGCACc -3' miRNA: 3'- uaCUGGAcuAGCGGCUGa---AGGCGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 17809 | 0.69 | 0.455962 |
Target: 5'- -gGGgCUGAUCGCCGAgUcgcUCgaGCACGg -3' miRNA: 3'- uaCUgGACUAGCGGCUgA---AGg-CGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 33489 | 0.68 | 0.476406 |
Target: 5'- -cGuaauCCgGAUCGCCGuucaGCaUCCGCGCGa -3' miRNA: 3'- uaCu---GGaCUAGCGGC----UGaAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 9852 | 0.68 | 0.497296 |
Target: 5'- --aACCUGAaCGCCG-CgcgCCGCACa -3' miRNA: 3'- uacUGGACUaGCGGCuGaa-GGCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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