miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 5' -55.6 NC_005887.1 + 262 0.66 0.617886
Target:  5'- -cGACCUGAU-GCCGAaagacgUgGCGCGg -3'
miRNA:   3'- uaCUGGACUAgCGGCUgaa---GgCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 525 0.72 0.281567
Target:  5'- -cGAUCUGAacgCGUCGGCcgCCGCGCGc -3'
miRNA:   3'- uaCUGGACUa--GCGGCUGaaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 745 0.68 0.466126
Target:  5'- -gGGCCg---CGCCGGCcgCCGCACc -3'
miRNA:   3'- uaCUGGacuaGCGGCUGaaGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 975 0.67 0.540229
Target:  5'- -cGAggUGAUCGCCGACa--CGCGCa -3'
miRNA:   3'- uaCUggACUAGCGGCUGaagGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 2506 0.66 0.617886
Target:  5'- -cGGCCUGcUCGugcacCCgGACUgCCGCACGc -3'
miRNA:   3'- uaCUGGACuAGC-----GG-CUGAaGGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 3080 0.72 0.303982
Target:  5'- -aGGCgCUGAaCGCCGACcacggCCGCAUGa -3'
miRNA:   3'- uaCUG-GACUaGCGGCUGaa---GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 4232 0.72 0.303982
Target:  5'- -cGugCUGcucgCGCCGACgcucggCCGCACGc -3'
miRNA:   3'- uaCugGACua--GCGGCUGaa----GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 4890 0.67 0.562168
Target:  5'- -cGACgaUGGUCGCCGAgggCCgGCGCGa -3'
miRNA:   3'- uaCUGg-ACUAGCGGCUgaaGG-CGUGC- -5'
28047 5' -55.6 NC_005887.1 + 5245 0.67 0.544595
Target:  5'- -cGGCCgcgcGAUCGCCGaggcugugcucgcccGCUUCgGUGCGa -3'
miRNA:   3'- uaCUGGa---CUAGCGGC---------------UGAAGgCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 5356 0.71 0.352852
Target:  5'- -cGGCCUGcgcgugcUCGCCGGCgagcucgacCCGCGCGa -3'
miRNA:   3'- uaCUGGACu------AGCGGCUGaa-------GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 6932 0.66 0.595493
Target:  5'- -cGACCUGAucgacUCGUgGGCgaaggCCGUGCGc -3'
miRNA:   3'- uaCUGGACU-----AGCGgCUGaa---GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 8539 0.66 0.595493
Target:  5'- -cGACCUGAcacccgcguggUgGCCGugggUCCGCGCu -3'
miRNA:   3'- uaCUGGACU-----------AgCGGCuga-AGGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 8827 0.66 0.640331
Target:  5'- -aGGCgCucacggUGAUCGCCGACaagaUCGCGCGg -3'
miRNA:   3'- uaCUG-G------ACUAGCGGCUGaa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 9852 0.68 0.497296
Target:  5'- --aACCUGAaCGCCG-CgcgCCGCACa -3'
miRNA:   3'- uacUGGACUaGCGGCuGaa-GGCGUGc -5'
28047 5' -55.6 NC_005887.1 + 9919 0.66 0.617886
Target:  5'- --aACCUGAUCGCCGcCggccacaucgCCGC-CGg -3'
miRNA:   3'- uacUGGACUAGCGGCuGaa--------GGCGuGC- -5'
28047 5' -55.6 NC_005887.1 + 9997 0.66 0.629107
Target:  5'- -gGACgUcacgaaGAUCGCCGACcacaUCaCGCGCGg -3'
miRNA:   3'- uaCUGgA------CUAGCGGCUGa---AG-GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 12955 0.7 0.388395
Target:  5'- --aGCCUGAUCG-CGACcgcgCCGCAUGg -3'
miRNA:   3'- uacUGGACUAGCgGCUGaa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 13506 0.67 0.573229
Target:  5'- -cGACgaGGUCGCCGGCacgggcaUGCGCGc -3'
miRNA:   3'- uaCUGgaCUAGCGGCUGaag----GCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 14656 0.67 0.561065
Target:  5'- -gGugCUGcccGUCGCCGguucgacGCUgccCCGCACGa -3'
miRNA:   3'- uaCugGAC---UAGCGGC-------UGAa--GGCGUGC- -5'
28047 5' -55.6 NC_005887.1 + 15207 0.67 0.518586
Target:  5'- cGUGGCCguucggccgcgUGAUCGCCGACgagUCG-ACGa -3'
miRNA:   3'- -UACUGG-----------ACUAGCGGCUGaa-GGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.