Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28047 | 5' | -55.6 | NC_005887.1 | + | 42057 | 0.7 | 0.379292 |
Target: 5'- -gGACCUGcUCGCCGACUggaUCgacgaGCGCu -3' miRNA: 3'- uaCUGGACuAGCGGCUGA---AGg----CGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 39532 | 0.67 | 0.529367 |
Target: 5'- ----aCUGG-CGCCGGCUcuguaccccaaUCCGCGCGa -3' miRNA: 3'- uacugGACUaGCGGCUGA-----------AGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 37065 | 0.69 | 0.435999 |
Target: 5'- -cGGCCUucUCGCUGACggcgUUCGCACc -3' miRNA: 3'- uaCUGGAcuAGCGGCUGa---AGGCGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 35743 | 0.66 | 0.639209 |
Target: 5'- cGUGGCCcacUCGCuCGGCUUCucguucaCGCGCGg -3' miRNA: 3'- -UACUGGacuAGCG-GCUGAAG-------GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 34375 | 0.66 | 0.617886 |
Target: 5'- -cGACgUGAuucgcuugUCGCCGAuCUUCgucagCGCGCGg -3' miRNA: 3'- uaCUGgACU--------AGCGGCU-GAAG-----GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 33489 | 0.68 | 0.476406 |
Target: 5'- -cGuaauCCgGAUCGCCGuucaGCaUCCGCGCGa -3' miRNA: 3'- uaCu---GGaCUAGCGGC----UGaAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 30271 | 0.66 | 0.595493 |
Target: 5'- gGUGACCUGAccgagcgacgUGCCGACcugCUGCAgCGc -3' miRNA: 3'- -UACUGGACUa---------GCGGCUGaa-GGCGU-GC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 30231 | 0.71 | 0.335964 |
Target: 5'- -cGGCCUGcUCGUCcuggcGCUUCUGCGCGg -3' miRNA: 3'- uaCUGGACuAGCGGc----UGAAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 29102 | 0.67 | 0.539139 |
Target: 5'- uGUGACCgucGGUCgcgacgaGCCGGgUUUCGUACGg -3' miRNA: 3'- -UACUGGa--CUAG-------CGGCUgAAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 28949 | 0.67 | 0.529367 |
Target: 5'- -cGGCUUGc-CGCCGACgUCCGcCGCGc -3' miRNA: 3'- uaCUGGACuaGCGGCUGaAGGC-GUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 27739 | 0.66 | 0.58434 |
Target: 5'- -cGcCCUcGAcggCGCCGACggCCGUACGc -3' miRNA: 3'- uaCuGGA-CUa--GCGGCUGaaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 26407 | 0.67 | 0.529367 |
Target: 5'- -gGuuCUGGUCgaGCUGGCggCCGCGCGg -3' miRNA: 3'- uaCugGACUAG--CGGCUGaaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 25854 | 0.71 | 0.331014 |
Target: 5'- -cGGCCUGcgacAUCGCCGACcagcccgccggauccUgCCGCGCGg -3' miRNA: 3'- uaCUGGAC----UAGCGGCUG---------------AaGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 25785 | 0.67 | 0.551165 |
Target: 5'- -gGGCCcGGUCGagauCGGCUUCgUGCACGa -3' miRNA: 3'- uaCUGGaCUAGCg---GCUGAAG-GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 25627 | 0.7 | 0.379292 |
Target: 5'- -cGACUUGAUcgCGCCGGCcgUCaCGUACGu -3' miRNA: 3'- uaCUGGACUA--GCGGCUGa-AG-GCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 23493 | 0.72 | 0.303982 |
Target: 5'- uUGAUCUGcUUGCCGACguguucggCCGCGCu -3' miRNA: 3'- uACUGGACuAGCGGCUGaa------GGCGUGc -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 17809 | 0.69 | 0.455962 |
Target: 5'- -gGGgCUGAUCGCCGAgUcgcUCgaGCACGg -3' miRNA: 3'- uaCUgGACUAGCGGCUgA---AGg-CGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 17505 | 1.07 | 0.000862 |
Target: 5'- aAUGACCUGAUCGCCGACUUCCGCACGa -3' miRNA: 3'- -UACUGGACUAGCGGCUGAAGGCGUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 15207 | 0.67 | 0.518586 |
Target: 5'- cGUGGCCguucggccgcgUGAUCGCCGACgagUCG-ACGa -3' miRNA: 3'- -UACUGG-----------ACUAGCGGCUGaa-GGCgUGC- -5' |
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28047 | 5' | -55.6 | NC_005887.1 | + | 14656 | 0.67 | 0.561065 |
Target: 5'- -gGugCUGcccGUCGCCGguucgacGCUgccCCGCACGa -3' miRNA: 3'- uaCugGAC---UAGCGGC-------UGAa--GGCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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