miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 10713 0.73 0.138262
Target:  5'- -cGAugGaCCGCGCGGuGCCGCUGuuCGa -3'
miRNA:   3'- acUUugC-GGCGCGCC-CGGCGACu-GCg -5'
28048 3' -60 NC_005887.1 + 11583 0.67 0.341177
Target:  5'- aGGAAcuCGCCGCGCGcacGGUCgaGCUGAC-Cg -3'
miRNA:   3'- aCUUU--GCGGCGCGC---CCGG--CGACUGcG- -5'
28048 3' -60 NC_005887.1 + 11715 0.66 0.410343
Target:  5'- aGAucgcuuCGCCGCGCGcacGGCgCGCacgaaUGcACGCa -3'
miRNA:   3'- aCUuu----GCGGCGCGC---CCG-GCG-----AC-UGCG- -5'
28048 3' -60 NC_005887.1 + 11743 0.66 0.383397
Target:  5'- gGAcGCGCUGCGCGaGuuGCU--CGCg -3'
miRNA:   3'- aCUuUGCGGCGCGCcCggCGAcuGCG- -5'
28048 3' -60 NC_005887.1 + 11866 0.71 0.206654
Target:  5'- cGguGCGCaaCGCaCGGGCCGCgucGCGCa -3'
miRNA:   3'- aCuuUGCG--GCGcGCCCGGCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 12120 0.69 0.260505
Target:  5'- aGAAGCGCCaggacgaGCaGGCCGCcGuCGCg -3'
miRNA:   3'- aCUUUGCGGcg-----CGcCCGGCGaCuGCG- -5'
28048 3' -60 NC_005887.1 + 12204 0.72 0.167138
Target:  5'- aGGAcaGCGCCGCGcCGGGCgCGCcgGAuuucaCGCc -3'
miRNA:   3'- aCUU--UGCGGCGC-GCCCG-GCGa-CU-----GCG- -5'
28048 3' -60 NC_005887.1 + 12470 0.71 0.196075
Target:  5'- aGAAACGCCGUacgcuCGGccuGCCGCagGACGUg -3'
miRNA:   3'- aCUUUGCGGCGc----GCC---CGGCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 12601 0.69 0.273927
Target:  5'- -----gGCCGCGaCGcucGGCgUGCUGACGCa -3'
miRNA:   3'- acuuugCGGCGC-GC---CCG-GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 12657 0.69 0.267148
Target:  5'- cGAGugGCUGCGCGuGCaGCUGccaagcaaGCGCc -3'
miRNA:   3'- aCUUugCGGCGCGCcCGgCGAC--------UGCG- -5'
28048 3' -60 NC_005887.1 + 12965 0.68 0.309893
Target:  5'- cGAccGCGCCGCaUGGGCCGagggcaUGcCGCu -3'
miRNA:   3'- aCUu-UGCGGCGcGCCCGGCg-----ACuGCG- -5'
28048 3' -60 NC_005887.1 + 13194 0.69 0.253997
Target:  5'- cGAGcAgGCCGC-CGGccgacgugugucGCUGCUGACGCc -3'
miRNA:   3'- aCUU-UgCGGCGcGCC------------CGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 13406 0.67 0.374681
Target:  5'- -cGGACGUCG-GCGGcaagccGCUGCUGACGa -3'
miRNA:   3'- acUUUGCGGCgCGCC------CGGCGACUGCg -5'
28048 3' -60 NC_005887.1 + 13557 0.66 0.409426
Target:  5'- cGAuGCGCUGCcgcccgaGCaGGCCGaC-GACGCg -3'
miRNA:   3'- aCUuUGCGGCG-------CGcCCGGC-GaCUGCG- -5'
28048 3' -60 NC_005887.1 + 13776 0.69 0.253997
Target:  5'- cGAccGCGuCCGCgcaGCGGGCgGC-GACGCc -3'
miRNA:   3'- aCUu-UGC-GGCG---CGCCCGgCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 13935 0.7 0.212127
Target:  5'- -cGAGCGCCuGCGCGcgcucGGCUGC-GACGUg -3'
miRNA:   3'- acUUUGCGG-CGCGC-----CCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 13969 0.66 0.383397
Target:  5'- gUGAcGACaGCCGCGaa-GCCGUcGACGCg -3'
miRNA:   3'- -ACU-UUG-CGGCGCgccCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14002 0.72 0.155829
Target:  5'- aGAAuGCGCCGCGCgccuccgcaaccgccGGcgcGCCGCcGGCGCa -3'
miRNA:   3'- aCUU-UGCGGCGCG---------------CC---CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14006 0.7 0.235274
Target:  5'- cGAAGCcaauGCCGCGCcGG-CGCaGACGCc -3'
miRNA:   3'- aCUUUG----CGGCGCGcCCgGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14107 0.72 0.17168
Target:  5'- gUGAAGCGCCgcucgcgaagcuGCGCGcGCUGCUcaaaaccgccgaGACGCg -3'
miRNA:   3'- -ACUUUGCGG------------CGCGCcCGGCGA------------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.