miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 4585 0.68 0.287897
Target:  5'- ----cCGCCgagGCGCaGGCCGCgcaGAUGCa -3'
miRNA:   3'- acuuuGCGG---CGCGcCCGGCGa--CUGCG- -5'
28048 3' -60 NC_005887.1 + 4615 0.74 0.117233
Target:  5'- aGAugcuCGCCGCgGCGccgguGGCCGCcGGCGCg -3'
miRNA:   3'- aCUuu--GCGGCG-CGC-----CCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 4765 0.76 0.091219
Target:  5'- uUGcGACGa-GCGCGGGaaGCUGACGCc -3'
miRNA:   3'- -ACuUUGCggCGCGCCCggCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 5153 0.73 0.138262
Target:  5'- --cGACGUCG-GCGcGCCGCUGAUGCu -3'
miRNA:   3'- acuUUGCGGCgCGCcCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 5406 0.69 0.267148
Target:  5'- gUGAAcCGgCGgGCGGcGCCGCagcgaccGGCGCg -3'
miRNA:   3'- -ACUUuGCgGCgCGCC-CGGCGa------CUGCG- -5'
28048 3' -60 NC_005887.1 + 5820 0.68 0.325255
Target:  5'- cGAucgaGUCgGCGCGGGUCGCgaagGGCGa -3'
miRNA:   3'- aCUuug-CGG-CGCGCCCGGCGa---CUGCg -5'
28048 3' -60 NC_005887.1 + 5925 0.68 0.302422
Target:  5'- aGAAGCcgGCCGCGCGgaaGGCgGU--GCGCa -3'
miRNA:   3'- aCUUUG--CGGCGCGC---CCGgCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 5935 0.67 0.374681
Target:  5'- cGGugUGUCGgGCGaGGUgaucgauaagcuCGCUGGCGCg -3'
miRNA:   3'- aCUuuGCGGCgCGC-CCG------------GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 6311 0.67 0.366099
Target:  5'- cGAGgccuuGCGCCuCGcCGGcGCCGaggUGACGCu -3'
miRNA:   3'- aCUU-----UGCGGcGC-GCC-CGGCg--ACUGCG- -5'
28048 3' -60 NC_005887.1 + 6608 0.68 0.300208
Target:  5'- cGAGAaGCCGagcgaGUGGGCCacgaccgcgaccgaGCUGcACGCg -3'
miRNA:   3'- aCUUUgCGGCg----CGCCCGG--------------CGAC-UGCG- -5'
28048 3' -60 NC_005887.1 + 6826 0.67 0.349346
Target:  5'- cGcuACGUgGCGCGGGuCUGCaacaucGACGUg -3'
miRNA:   3'- aCuuUGCGgCGCGCCC-GGCGa-----CUGCG- -5'
28048 3' -60 NC_005887.1 + 8397 0.67 0.366099
Target:  5'- cGAAGCGacaaggCGCGUGGGCCGagcACGa -3'
miRNA:   3'- aCUUUGCg-----GCGCGCCCGGCgacUGCg -5'
28048 3' -60 NC_005887.1 + 9084 0.67 0.333146
Target:  5'- gUGAGggugcAUGCCaGCGCGGGCa-CcGGCGCc -3'
miRNA:   3'- -ACUU-----UGCGG-CGCGCCCGgcGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 9197 0.67 0.374681
Target:  5'- cGAAGCaCCGcCGCGgcacggucGGCUGCUucuaccGACGCa -3'
miRNA:   3'- aCUUUGcGGC-GCGC--------CCGGCGA------CUGCG- -5'
28048 3' -60 NC_005887.1 + 9290 0.67 0.332351
Target:  5'- gGcGACGCCGCagguuaCGGGCaccgaaaCGCcGACGCa -3'
miRNA:   3'- aCuUUGCGGCGc-----GCCCG-------GCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 9393 0.68 0.320588
Target:  5'- ---cGCGCCGCGCGagaacguauucgcgcGGUCGUUgaGACGUa -3'
miRNA:   3'- acuuUGCGGCGCGC---------------CCGGCGA--CUGCG- -5'
28048 3' -60 NC_005887.1 + 9560 0.68 0.312921
Target:  5'- gUGAAGCGgCGCGCgccgauccugcgcacGagccGGCUGCaUGGCGCg -3'
miRNA:   3'- -ACUUUGCgGCGCG---------------C----CCGGCG-ACUGCG- -5'
28048 3' -60 NC_005887.1 + 9622 0.66 0.428947
Target:  5'- -cGAGCGCCGCGCuaccccGCCGUgggUGAacCGCg -3'
miRNA:   3'- acUUUGCGGCGCGcc----CGGCG---ACU--GCG- -5'
28048 3' -60 NC_005887.1 + 9891 0.67 0.374681
Target:  5'- cGAuccgcACGCCGCGCaGuGGCUGCgcaaccUGAuCGCc -3'
miRNA:   3'- aCUu----UGCGGCGCG-C-CCGGCG------ACU-GCG- -5'
28048 3' -60 NC_005887.1 + 10089 0.66 0.428947
Target:  5'- ----cCGUCGUGUGGGCgGCccGCGCc -3'
miRNA:   3'- acuuuGCGGCGCGCCCGgCGacUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.