Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28048 | 3' | -60 | NC_005887.1 | + | 2461 | 0.72 | 0.167138 |
Target: 5'- --cGGCGCCGuCGaCGaGG-CGCUGACGCg -3' miRNA: 3'- acuUUGCGGC-GC-GC-CCgGCGACUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 12204 | 0.72 | 0.167138 |
Target: 5'- aGGAcaGCGCCGCGcCGGGCgCGCcgGAuuucaCGCc -3' miRNA: 3'- aCUU--UGCGGCGC-GCCCG-GCGa-CU-----GCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 5153 | 0.73 | 0.138262 |
Target: 5'- --cGACGUCG-GCGcGCCGCUGAUGCu -3' miRNA: 3'- acuUUGCGGCgCGCcCGGCGACUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 4615 | 0.74 | 0.117233 |
Target: 5'- aGAugcuCGCCGCgGCGccgguGGCCGCcGGCGCg -3' miRNA: 3'- aCUuu--GCGGCG-CGC-----CCGGCGaCUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 14935 | 0.74 | 0.110912 |
Target: 5'- cGAcgcACGCCGCGCGcuGCCGUacGACGCg -3' miRNA: 3'- aCUu--UGCGGCGCGCc-CGGCGa-CUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 22781 | 0.74 | 0.110604 |
Target: 5'- uUGGcucGACGCCG-GCGcGGCCGCUGuuguucacgagcuACGCg -3' miRNA: 3'- -ACU---UUGCGGCgCGC-CCGGCGAC-------------UGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 4765 | 0.76 | 0.091219 |
Target: 5'- uUGcGACGa-GCGCGGGaaGCUGACGCc -3' miRNA: 3'- -ACuUUGCggCGCGCCCggCGACUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 14973 | 0.77 | 0.068764 |
Target: 5'- cGAcgccuACGCCGCGCaGGCCGCgcagGcCGCa -3' miRNA: 3'- aCUu----UGCGGCGCGcCCGGCGa---CuGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 18138 | 0.79 | 0.050217 |
Target: 5'- --cGGCGaaGCGCGGGCCGCcGACGUc -3' miRNA: 3'- acuUUGCggCGCGCCCGGCGaCUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 24945 | 0.8 | 0.044761 |
Target: 5'- cGAcGCGUgCGCGCGGGCCGCcuuGCGCg -3' miRNA: 3'- aCUuUGCG-GCGCGCCCGGCGac-UGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 10713 | 0.73 | 0.138262 |
Target: 5'- -cGAugGaCCGCGCGGuGCCGCUGuuCGa -3' miRNA: 3'- acUUugC-GGCGCGCC-CGGCGACu-GCg -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 15692 | 0.73 | 0.142088 |
Target: 5'- ----cCGCCGCGCGGccggaugauuccGCCGCcGGCGUg -3' miRNA: 3'- acuuuGCGGCGCGCC------------CGGCGaCUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 40733 | 0.72 | 0.162704 |
Target: 5'- cGAGGuCGCCGCccgcgucgagGCGaucGCCGUUGGCGCg -3' miRNA: 3'- aCUUU-GCGGCG----------CGCc--CGGCGACUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 26700 | 0.72 | 0.162704 |
Target: 5'- cGAuACaGCCGuCGCGcGGCCGCgGGCaGCu -3' miRNA: 3'- aCUuUG-CGGC-GCGC-CCGGCGaCUG-CG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 23524 | 0.72 | 0.161394 |
Target: 5'- --uGACGaaCGCGCGGGUgagcuggcagcguaCGCUGACGCc -3' miRNA: 3'- acuUUGCg-GCGCGCCCG--------------GCGACUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 26416 | 0.72 | 0.158376 |
Target: 5'- cGAGcugGCgGCCGCGCGGGaacgcgCGCUGcagccGCGCg -3' miRNA: 3'- aCUU---UG-CGGCGCGCCCg-----GCGAC-----UGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 415 | 0.72 | 0.158376 |
Target: 5'- aGAcGCGCCGCGCcGcCCGCUGuuGCu -3' miRNA: 3'- aCUuUGCGGCGCGcCcGGCGACugCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 14002 | 0.72 | 0.155829 |
Target: 5'- aGAAuGCGCCGCGCgccuccgcaaccgccGGcgcGCCGCcGGCGCa -3' miRNA: 3'- aCUU-UGCGGCGCG---------------CC---CGGCGaCUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 15918 | 0.72 | 0.154152 |
Target: 5'- cGAccuGCGuuCCGCGCGGGCCGgaaucGAUGCg -3' miRNA: 3'- aCUu--UGC--GGCGCGCCCGGCga---CUGCG- -5' |
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28048 | 3' | -60 | NC_005887.1 | + | 29660 | 0.72 | 0.154152 |
Target: 5'- ---cGCGCgGCGCGaGGUagcacaGCUGGCGCu -3' miRNA: 3'- acuuUGCGgCGCGC-CCGg-----CGACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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