miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 23930 0.66 0.418653
Target:  5'- cGAucAGCGUCGUGCugacgacGGcGCCGC-GGCGUa -3'
miRNA:   3'- aCU--UUGCGGCGCG-------CC-CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 35917 0.66 0.419582
Target:  5'- cGGAAUGCCGCGUGuuGCCGUUcaGAUcgGCc -3'
miRNA:   3'- aCUUUGCGGCGCGCc-CGGCGA--CUG--CG- -5'
28048 3' -60 NC_005887.1 + 14559 0.66 0.419582
Target:  5'- ----uCGCCuGCGuCGGcGCCGUcgucaUGGCGCu -3'
miRNA:   3'- acuuuGCGG-CGC-GCC-CGGCG-----ACUGCG- -5'
28048 3' -60 NC_005887.1 + 41776 0.66 0.40123
Target:  5'- cGAGGucgUGCCGaCGUGGGUCGCguucAUGCc -3'
miRNA:   3'- aCUUU---GCGGC-GCGCCCGGCGac--UGCG- -5'
28048 3' -60 NC_005887.1 + 11715 0.66 0.410343
Target:  5'- aGAucgcuuCGCCGCGCGcacGGCgCGCacgaaUGcACGCa -3'
miRNA:   3'- aCUuu----GCGGCGCGC---CCG-GCG-----AC-UGCG- -5'
28048 3' -60 NC_005887.1 + 10089 0.66 0.428947
Target:  5'- ----cCGUCGUGUGGGCgGCccGCGCc -3'
miRNA:   3'- acuuuGCGGCGCGCCCGgCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 26403 0.66 0.428947
Target:  5'- cGGcgUGCgGCGCGuGGCCG---GCGCa -3'
miRNA:   3'- aCUuuGCGgCGCGC-CCGGCgacUGCG- -5'
28048 3' -60 NC_005887.1 + 40864 0.66 0.383397
Target:  5'- cGAAGcCGCCGCGCGcGUCGaaGAagaaaCGCg -3'
miRNA:   3'- aCUUU-GCGGCGCGCcCGGCgaCU-----GCG- -5'
28048 3' -60 NC_005887.1 + 21650 0.67 0.373816
Target:  5'- --cGACGCCGaccaaucUGaCGGGCguguCGCUGACGUc -3'
miRNA:   3'- acuUUGCGGC-------GC-GCCCG----GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 16105 0.67 0.366099
Target:  5'- gUGAAACGCUuuccggugGCGCuGcGCCGC--GCGCa -3'
miRNA:   3'- -ACUUUGCGG--------CGCGcC-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 15383 0.67 0.366099
Target:  5'- aGGucGACGCCgcgcugaucgcGCGCGGGCaGCggaucgucgacGACGCa -3'
miRNA:   3'- aCU--UUGCGG-----------CGCGCCCGgCGa----------CUGCG- -5'
28048 3' -60 NC_005887.1 + 24453 0.67 0.357654
Target:  5'- gGAcACGCaGCauCaGGCCGUUGGCGCg -3'
miRNA:   3'- aCUuUGCGgCGc-GcCCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 29779 0.67 0.352652
Target:  5'- aGGAuCGCCGCGUcgcgcagcucGGGCCaguaGCUGgaagucugcggguguGCGCg -3'
miRNA:   3'- aCUUuGCGGCGCG----------CCCGG----CGAC---------------UGCG- -5'
28048 3' -60 NC_005887.1 + 16235 0.67 0.349346
Target:  5'- cGAuACGCCggccggcgaGCGCacGGGCaccgucgccgaGCUGAUGCa -3'
miRNA:   3'- aCUuUGCGG---------CGCG--CCCGg----------CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 4241 0.67 0.366099
Target:  5'- ---cGCGCCGaCGCucGGCCGC--ACGCa -3'
miRNA:   3'- acuuUGCGGC-GCGc-CCGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 8397 0.67 0.366099
Target:  5'- cGAAGCGacaaggCGCGUGGGCCGagcACGa -3'
miRNA:   3'- aCUUUGCg-----GCGCGCCCGGCgacUGCg -5'
28048 3' -60 NC_005887.1 + 31131 0.67 0.366099
Target:  5'- cGAGcuUGCCGgGCaGGCCGU--GCGCa -3'
miRNA:   3'- aCUUu-GCGGCgCGcCCGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 41461 0.67 0.372092
Target:  5'- cGgcACGCCGCGCGaGGaucugcucaucaucCCGCaUGGCa- -3'
miRNA:   3'- aCuuUGCGGCGCGC-CC--------------GGCG-ACUGcg -5'
28048 3' -60 NC_005887.1 + 26206 0.67 0.374681
Target:  5'- cGggGCGgCGgugGCcGGCCugcaGCUGGCGCa -3'
miRNA:   3'- aCuuUGCgGCg--CGcCCGG----CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 5935 0.67 0.374681
Target:  5'- cGGugUGUCGgGCGaGGUgaucgauaagcuCGCUGGCGCg -3'
miRNA:   3'- aCUuuGCGGCgCGC-CCG------------GCGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.