miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 15918 0.72 0.154152
Target:  5'- cGAccuGCGuuCCGCGCGGGCCGgaaucGAUGCg -3'
miRNA:   3'- aCUu--UGC--GGCGCGCCCGGCga---CUGCG- -5'
28048 3' -60 NC_005887.1 + 29660 0.72 0.154152
Target:  5'- ---cGCGCgGCGCGaGGUagcacaGCUGGCGCu -3'
miRNA:   3'- acuuUGCGgCGCGC-CCGg-----CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 14002 0.72 0.155829
Target:  5'- aGAAuGCGCCGCGCgccuccgcaaccgccGGcgcGCCGCcGGCGCa -3'
miRNA:   3'- aCUU-UGCGGCGCG---------------CC---CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 24419 0.72 0.158376
Target:  5'- cUGAAACGCCGUGCGuaGCgCGUccguccaaccugUGACGCc -3'
miRNA:   3'- -ACUUUGCGGCGCGCc-CG-GCG------------ACUGCG- -5'
28048 3' -60 NC_005887.1 + 26416 0.72 0.158376
Target:  5'- cGAGcugGCgGCCGCGCGGGaacgcgCGCUGcagccGCGCg -3'
miRNA:   3'- aCUU---UG-CGGCGCGCCCg-----GCGAC-----UGCG- -5'
28048 3' -60 NC_005887.1 + 20459 0.72 0.158376
Target:  5'- -cAAGCGagauaCGCGCGGGCCacguGCUGAUGa -3'
miRNA:   3'- acUUUGCg----GCGCGCCCGG----CGACUGCg -5'
28048 3' -60 NC_005887.1 + 415 0.72 0.158376
Target:  5'- aGAcGCGCCGCGCcGcCCGCUGuuGCu -3'
miRNA:   3'- aCUuUGCGGCGCGcCcGGCGACugCG- -5'
28048 3' -60 NC_005887.1 + 23524 0.72 0.161394
Target:  5'- --uGACGaaCGCGCGGGUgagcuggcagcguaCGCUGACGCc -3'
miRNA:   3'- acuUUGCg-GCGCGCCCG--------------GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 40864 0.72 0.162704
Target:  5'- ---cGCGCCGCGCGaGcGCCGC--ACGCc -3'
miRNA:   3'- acuuUGCGGCGCGC-C-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 26700 0.72 0.162704
Target:  5'- cGAuACaGCCGuCGCGcGGCCGCgGGCaGCu -3'
miRNA:   3'- aCUuUG-CGGC-GCGC-CCGGCGaCUG-CG- -5'
28048 3' -60 NC_005887.1 + 40733 0.72 0.162704
Target:  5'- cGAGGuCGCCGCccgcgucgagGCGaucGCCGUUGGCGCg -3'
miRNA:   3'- aCUUU-GCGGCG----------CGCc--CGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 2461 0.72 0.167138
Target:  5'- --cGGCGCCGuCGaCGaGG-CGCUGACGCg -3'
miRNA:   3'- acuUUGCGGC-GC-GC-CCgGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 12204 0.72 0.167138
Target:  5'- aGGAcaGCGCCGCGcCGGGCgCGCcgGAuuucaCGCc -3'
miRNA:   3'- aCUU--UGCGGCGC-GCCCG-GCGa-CU-----GCG- -5'
28048 3' -60 NC_005887.1 + 273 0.72 0.17168
Target:  5'- cGAaaGACGUgGCGCGGGaaCUGCgUGGCGUg -3'
miRNA:   3'- aCU--UUGCGgCGCGCCC--GGCG-ACUGCG- -5'
28048 3' -60 NC_005887.1 + 14107 0.72 0.17168
Target:  5'- gUGAAGCGCCgcucgcgaagcuGCGCGcGCUGCUcaaaaccgccgaGACGCg -3'
miRNA:   3'- -ACUUUGCGG------------CGCGCcCGGCGA------------CUGCG- -5'
28048 3' -60 NC_005887.1 + 29731 0.72 0.178223
Target:  5'- aGGAucacGCGCCGCGCGugcacggucuugcccGGCgaGCUGAuCGCg -3'
miRNA:   3'- aCUU----UGCGGCGCGC---------------CCGg-CGACU-GCG- -5'
28048 3' -60 NC_005887.1 + 36926 0.71 0.181095
Target:  5'- cGcGugGUCGCGCcGGUCGCUGcgGCGCc -3'
miRNA:   3'- aCuUugCGGCGCGcCCGGCGAC--UGCG- -5'
28048 3' -60 NC_005887.1 + 36975 0.71 0.190965
Target:  5'- --cGGCGUCGCGCGGGUCGagcuCGCc -3'
miRNA:   3'- acuUUGCGGCGCGCCCGGCgacuGCG- -5'
28048 3' -60 NC_005887.1 + 12470 0.71 0.196075
Target:  5'- aGAAACGCCGUacgcuCGGccuGCCGCagGACGUg -3'
miRNA:   3'- aCUUUGCGGCGc----GCC---CGGCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 16447 0.71 0.196075
Target:  5'- aGAAccGCGUgCGCGCGGGCaugCGCUcGACcGCg -3'
miRNA:   3'- aCUU--UGCG-GCGCGCCCG---GCGA-CUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.