miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 16267 1.12 0.00016
Target:  5'- aUGAAACGCCGCGCGGGCCGCUGACGCg -3'
miRNA:   3'- -ACUUUGCGGCGCGCCCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 17278 0.8 0.039886
Target:  5'- cGAGACGUCGgGCGGcGCCGCgcGCGCa -3'
miRNA:   3'- aCUUUGCGGCgCGCC-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 24945 0.8 0.044761
Target:  5'- cGAcGCGUgCGCGCGGGCCGCcuuGCGCg -3'
miRNA:   3'- aCUuUGCG-GCGCGCCCGGCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 18138 0.79 0.050217
Target:  5'- --cGGCGaaGCGCGGGCCGCcGACGUc -3'
miRNA:   3'- acuUUGCggCGCGCCCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 39404 0.78 0.056318
Target:  5'- aGGAugGUCGCgGCGGuGCCGC-GGCGCu -3'
miRNA:   3'- aCUUugCGGCG-CGCC-CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14973 0.77 0.068764
Target:  5'- cGAcgccuACGCCGCGCaGGCCGCgcagGcCGCa -3'
miRNA:   3'- aCUu----UGCGGCGCGcCCGGCGa---CuGCG- -5'
28048 3' -60 NC_005887.1 + 38741 0.77 0.074874
Target:  5'- cGAAGCGCUGCGC-GGCC--UGGCGCa -3'
miRNA:   3'- aCUUUGCGGCGCGcCCGGcgACUGCG- -5'
28048 3' -60 NC_005887.1 + 41816 0.76 0.091219
Target:  5'- --cGGCGCgGCGCGcGGCgGCcGACGCg -3'
miRNA:   3'- acuUUGCGgCGCGC-CCGgCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 4765 0.76 0.091219
Target:  5'- uUGcGACGa-GCGCGGGaaGCUGACGCc -3'
miRNA:   3'- -ACuUUGCggCGCGCCCggCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 22781 0.74 0.110604
Target:  5'- uUGGcucGACGCCG-GCGcGGCCGCUGuuguucacgagcuACGCg -3'
miRNA:   3'- -ACU---UUGCGGCgCGC-CCGGCGAC-------------UGCG- -5'
28048 3' -60 NC_005887.1 + 14935 0.74 0.110912
Target:  5'- cGAcgcACGCCGCGCGcuGCCGUacGACGCg -3'
miRNA:   3'- aCUu--UGCGGCGCGCc-CGGCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 23711 0.74 0.110912
Target:  5'- gGAAcaGCGUCGacagcaGCGGGCCGCcGAuCGCg -3'
miRNA:   3'- aCUU--UGCGGCg-----CGCCCGGCGaCU-GCG- -5'
28048 3' -60 NC_005887.1 + 4615 0.74 0.117233
Target:  5'- aGAugcuCGCCGCgGCGccgguGGCCGCcGGCGCg -3'
miRNA:   3'- aCUuu--GCGGCG-CGC-----CCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 39342 0.74 0.123889
Target:  5'- ----cCGCgGCGCuGGCCGCaGGCGCg -3'
miRNA:   3'- acuuuGCGgCGCGcCCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 32131 0.73 0.130894
Target:  5'- aGAcGCGCCguccgGCGCGGGCaucgaCGC-GACGCa -3'
miRNA:   3'- aCUuUGCGG-----CGCGCCCG-----GCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 5153 0.73 0.138262
Target:  5'- --cGACGUCG-GCGcGCCGCUGAUGCu -3'
miRNA:   3'- acuUUGCGGCgCGCcCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 10713 0.73 0.138262
Target:  5'- -cGAugGaCCGCGCGGuGCCGCUGuuCGa -3'
miRNA:   3'- acUUugC-GGCGCGCC-CGGCGACu-GCg -5'
28048 3' -60 NC_005887.1 + 25166 0.73 0.138263
Target:  5'- ----uUGCCGCGUGcGGCCGCguucGCGCg -3'
miRNA:   3'- acuuuGCGGCGCGC-CCGGCGac--UGCG- -5'
28048 3' -60 NC_005887.1 + 27482 0.73 0.142088
Target:  5'- ----cUGCCGCGCGGuGCgCGCUGuuGCu -3'
miRNA:   3'- acuuuGCGGCGCGCC-CG-GCGACugCG- -5'
28048 3' -60 NC_005887.1 + 15692 0.73 0.142088
Target:  5'- ----cCGCCGCGCGGccggaugauuccGCCGCcGGCGUg -3'
miRNA:   3'- acuuuGCGGCGCGCC------------CGGCGaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.