miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 273 0.72 0.17168
Target:  5'- cGAaaGACGUgGCGCGGGaaCUGCgUGGCGUg -3'
miRNA:   3'- aCU--UUGCGgCGCGCCC--GGCG-ACUGCG- -5'
28048 3' -60 NC_005887.1 + 339 0.68 0.30914
Target:  5'- ---cGCGCCGCggcgacacucgacGUGGGCCGCaGGcCGUg -3'
miRNA:   3'- acuuUGCGGCG-------------CGCCCGGCGaCU-GCG- -5'
28048 3' -60 NC_005887.1 + 415 0.72 0.158376
Target:  5'- aGAcGCGCCGCGCcGcCCGCUGuuGCu -3'
miRNA:   3'- aCUuUGCGGCGCGcCcGGCGACugCG- -5'
28048 3' -60 NC_005887.1 + 455 0.66 0.410343
Target:  5'- cUGgcGCGUgugGUGCGGGCaugagcaaGCUGACcGCa -3'
miRNA:   3'- -ACuuUGCGg--CGCGCCCGg-------CGACUG-CG- -5'
28048 3' -60 NC_005887.1 + 703 0.69 0.260505
Target:  5'- cGuAGACGaaGCGUGcGCCGCgcaGACGCa -3'
miRNA:   3'- aC-UUUGCggCGCGCcCGGCGa--CUGCG- -5'
28048 3' -60 NC_005887.1 + 746 0.66 0.428947
Target:  5'- -----gGCCGCGCcGGCCGC---CGCa -3'
miRNA:   3'- acuuugCGGCGCGcCCGGCGacuGCG- -5'
28048 3' -60 NC_005887.1 + 1152 0.68 0.317504
Target:  5'- --cGACGaCGCGCGGGUCG--GAUGCa -3'
miRNA:   3'- acuUUGCgGCGCGCCCGGCgaCUGCG- -5'
28048 3' -60 NC_005887.1 + 1229 0.67 0.341177
Target:  5'- cUGGcgGGCGCUGCGCGGcGCUcaGC--ACGCg -3'
miRNA:   3'- -ACU--UUGCGGCGCGCC-CGG--CGacUGCG- -5'
28048 3' -60 NC_005887.1 + 1320 0.69 0.273927
Target:  5'- cGAccuGCaCCGCGCGGcGCCaGUaGACGCc -3'
miRNA:   3'- aCUu--UGcGGCGCGCC-CGG-CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 1478 0.69 0.247624
Target:  5'- cGAcgccGACGgCGUGCGGcGCuCGCgcGGCGCg -3'
miRNA:   3'- aCU----UUGCgGCGCGCC-CG-GCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 1838 0.66 0.383397
Target:  5'- ---cGCGCCGCGUGGuggauGCCGaacacGACGUc -3'
miRNA:   3'- acuuUGCGGCGCGCC-----CGGCga---CUGCG- -5'
28048 3' -60 NC_005887.1 + 2203 0.69 0.280843
Target:  5'- cGGgcAGCGCaaacCGaUGGGCgGCUGGCGCa -3'
miRNA:   3'- aCU--UUGCGgc--GC-GCCCGgCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 2383 0.69 0.273927
Target:  5'- aGAcACGCCGUuccggauccuGCGuGCCGCUGGCu- -3'
miRNA:   3'- aCUuUGCGGCG----------CGCcCGGCGACUGcg -5'
28048 3' -60 NC_005887.1 + 2461 0.72 0.167138
Target:  5'- --cGGCGCCGuCGaCGaGG-CGCUGACGCg -3'
miRNA:   3'- acuUUGCGGC-GC-GC-CCgGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 2693 0.66 0.428947
Target:  5'- gUGAAGCGUaCGgGCGGcaagcggccgaGCCGCgcgacgacggacUGACGUa -3'
miRNA:   3'- -ACUUUGCG-GCgCGCC-----------CGGCG------------ACUGCG- -5'
28048 3' -60 NC_005887.1 + 3161 0.7 0.223446
Target:  5'- --uGAUGCCGCGCcucgacaaguucGGGCaGCUGcCGCg -3'
miRNA:   3'- acuUUGCGGCGCG------------CCCGgCGACuGCG- -5'
28048 3' -60 NC_005887.1 + 3397 0.69 0.253997
Target:  5'- cUGuu-CGCCGCGCGcuaCCGCUGGCa- -3'
miRNA:   3'- -ACuuuGCGGCGCGCcc-GGCGACUGcg -5'
28048 3' -60 NC_005887.1 + 3600 0.68 0.29509
Target:  5'- gGAGcucACGuuGCGCcaGGCCGCgcaGCGCu -3'
miRNA:   3'- aCUU---UGCggCGCGc-CCGGCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 4068 0.67 0.349346
Target:  5'- gUGAAGcCGCUGCucaCGGGCaaGCaGGCGCa -3'
miRNA:   3'- -ACUUU-GCGGCGc--GCCCGg-CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 4241 0.67 0.366099
Target:  5'- ---cGCGCCGaCGCucGGCCGC--ACGCa -3'
miRNA:   3'- acuuUGCGGC-GCGc-CCGGCGacUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.