miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 42081 0.69 0.267148
Target:  5'- -cGAGCGCuguCGCGUGGGgCGC-GAUGCc -3'
miRNA:   3'- acUUUGCG---GCGCGCCCgGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 41926 0.68 0.325256
Target:  5'- -cGAGCGCaGCaacaGCGGGCgGCgcGGCGCg -3'
miRNA:   3'- acUUUGCGgCG----CGCCCGgCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 41816 0.76 0.091219
Target:  5'- --cGGCGCgGCGCGcGGCgGCcGACGCg -3'
miRNA:   3'- acuUUGCGgCGCGC-CCGgCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 41776 0.66 0.40123
Target:  5'- cGAGGucgUGCCGaCGUGGGUCGCguucAUGCc -3'
miRNA:   3'- aCUUU---GCGGC-GCGCCCGGCGac--UGCG- -5'
28048 3' -60 NC_005887.1 + 41461 0.67 0.372092
Target:  5'- cGgcACGCCGCGCGaGGaucugcucaucaucCCGCaUGGCa- -3'
miRNA:   3'- aCuuUGCGGCGCGC-CC--------------GGCG-ACUGcg -5'
28048 3' -60 NC_005887.1 + 41426 0.7 0.229296
Target:  5'- cGggGCaCuCGCgauGCGGGUCGC-GACGCg -3'
miRNA:   3'- aCuuUGcG-GCG---CGCCCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 41353 0.67 0.338753
Target:  5'- cGAuccgcGCGCCGC-CGGGaaGCUGuucgagcagaccguGCGCg -3'
miRNA:   3'- aCUu----UGCGGCGcGCCCggCGAC--------------UGCG- -5'
28048 3' -60 NC_005887.1 + 41281 0.67 0.374681
Target:  5'- cGAccuGCGCaCGgGCGcGCUGCUGcCGCc -3'
miRNA:   3'- aCUu--UGCG-GCgCGCcCGGCGACuGCG- -5'
28048 3' -60 NC_005887.1 + 40864 0.66 0.383397
Target:  5'- cGAAGcCGCCGCGCGcGUCGaaGAagaaaCGCg -3'
miRNA:   3'- aCUUU-GCGGCGCGCcCGGCgaCU-----GCG- -5'
28048 3' -60 NC_005887.1 + 40864 0.72 0.162704
Target:  5'- ---cGCGCCGCGCGaGcGCCGC--ACGCc -3'
miRNA:   3'- acuuUGCGGCGCGC-C-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 40733 0.72 0.162704
Target:  5'- cGAGGuCGCCGCccgcgucgagGCGaucGCCGUUGGCGCg -3'
miRNA:   3'- aCUUU-GCGGCG----------CGCc--CGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 40123 0.69 0.267148
Target:  5'- -aGGACGCCuacagcGUGCGGuGCgCGCUG-CGCg -3'
miRNA:   3'- acUUUGCGG------CGCGCC-CG-GCGACuGCG- -5'
28048 3' -60 NC_005887.1 + 39825 0.66 0.40123
Target:  5'- cUGGAuaaaG-CGCGaCGGGCCGCcGuCGCa -3'
miRNA:   3'- -ACUUug--CgGCGC-GCCCGGCGaCuGCG- -5'
28048 3' -60 NC_005887.1 + 39641 0.67 0.333146
Target:  5'- cGu--CGUCGCGCGgcucGGCCGCUuGcCGCc -3'
miRNA:   3'- aCuuuGCGGCGCGC----CCGGCGA-CuGCG- -5'
28048 3' -60 NC_005887.1 + 39404 0.78 0.056318
Target:  5'- aGGAugGUCGCgGCGGuGCCGC-GGCGCu -3'
miRNA:   3'- aCUUugCGGCG-CGCC-CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 39342 0.74 0.123889
Target:  5'- ----cCGCgGCGCuGGCCGCaGGCGCg -3'
miRNA:   3'- acuuuGCGgCGCGcCCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 38741 0.77 0.074874
Target:  5'- cGAAGCGCUGCGC-GGCC--UGGCGCa -3'
miRNA:   3'- aCUUUGCGGCGCGcCCGGcgACUGCG- -5'
28048 3' -60 NC_005887.1 + 37942 0.66 0.392248
Target:  5'- aGGAuCGCCGCGCcu-UCGCcGGCGCg -3'
miRNA:   3'- aCUUuGCGGCGCGcccGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 37834 0.68 0.287897
Target:  5'- cGGGACGCCGC-CGuagucGGCgaGCaGACGCg -3'
miRNA:   3'- aCUUUGCGGCGcGC-----CCGg-CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 36975 0.71 0.190965
Target:  5'- --cGGCGUCGCGCGGGUCGagcuCGCc -3'
miRNA:   3'- acuUUGCGGCGCGCCCGGCgacuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.