miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 2461 0.72 0.167138
Target:  5'- --cGGCGCCGuCGaCGaGG-CGCUGACGCg -3'
miRNA:   3'- acuUUGCGGC-GC-GC-CCgGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 15918 0.72 0.154152
Target:  5'- cGAccuGCGuuCCGCGCGGGCCGgaaucGAUGCg -3'
miRNA:   3'- aCUu--UGC--GGCGCGCCCGGCga---CUGCG- -5'
28048 3' -60 NC_005887.1 + 14002 0.72 0.155829
Target:  5'- aGAAuGCGCCGCGCgccuccgcaaccgccGGcgcGCCGCcGGCGCa -3'
miRNA:   3'- aCUU-UGCGGCGCG---------------CC---CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 415 0.72 0.158376
Target:  5'- aGAcGCGCCGCGCcGcCCGCUGuuGCu -3'
miRNA:   3'- aCUuUGCGGCGCGcCcGGCGACugCG- -5'
28048 3' -60 NC_005887.1 + 26416 0.72 0.158376
Target:  5'- cGAGcugGCgGCCGCGCGGGaacgcgCGCUGcagccGCGCg -3'
miRNA:   3'- aCUU---UG-CGGCGCGCCCg-----GCGAC-----UGCG- -5'
28048 3' -60 NC_005887.1 + 23524 0.72 0.161394
Target:  5'- --uGACGaaCGCGCGGGUgagcuggcagcguaCGCUGACGCc -3'
miRNA:   3'- acuUUGCg-GCGCGCCCG--------------GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 26700 0.72 0.162704
Target:  5'- cGAuACaGCCGuCGCGcGGCCGCgGGCaGCu -3'
miRNA:   3'- aCUuUG-CGGC-GCGC-CCGGCGaCUG-CG- -5'
28048 3' -60 NC_005887.1 + 40733 0.72 0.162704
Target:  5'- cGAGGuCGCCGCccgcgucgagGCGaucGCCGUUGGCGCg -3'
miRNA:   3'- aCUUU-GCGGCG----------CGCc--CGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 12204 0.72 0.167138
Target:  5'- aGGAcaGCGCCGCGcCGGGCgCGCcgGAuuucaCGCc -3'
miRNA:   3'- aCUU--UGCGGCGC-GCCCG-GCGa-CU-----GCG- -5'
28048 3' -60 NC_005887.1 + 29660 0.72 0.154152
Target:  5'- ---cGCGCgGCGCGaGGUagcacaGCUGGCGCu -3'
miRNA:   3'- acuuUGCGgCGCGC-CCGg-----CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 15692 0.73 0.142088
Target:  5'- ----cCGCCGCGCGGccggaugauuccGCCGCcGGCGUg -3'
miRNA:   3'- acuuuGCGGCGCGCC------------CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 10713 0.73 0.138262
Target:  5'- -cGAugGaCCGCGCGGuGCCGCUGuuCGa -3'
miRNA:   3'- acUUugC-GGCGCGCC-CGGCGACu-GCg -5'
28048 3' -60 NC_005887.1 + 24945 0.8 0.044761
Target:  5'- cGAcGCGUgCGCGCGGGCCGCcuuGCGCg -3'
miRNA:   3'- aCUuUGCG-GCGCGCCCGGCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 18138 0.79 0.050217
Target:  5'- --cGGCGaaGCGCGGGCCGCcGACGUc -3'
miRNA:   3'- acuUUGCggCGCGCCCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14973 0.77 0.068764
Target:  5'- cGAcgccuACGCCGCGCaGGCCGCgcagGcCGCa -3'
miRNA:   3'- aCUu----UGCGGCGCGcCCGGCGa---CuGCG- -5'
28048 3' -60 NC_005887.1 + 4765 0.76 0.091219
Target:  5'- uUGcGACGa-GCGCGGGaaGCUGACGCc -3'
miRNA:   3'- -ACuUUGCggCGCGCCCggCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 22781 0.74 0.110604
Target:  5'- uUGGcucGACGCCG-GCGcGGCCGCUGuuguucacgagcuACGCg -3'
miRNA:   3'- -ACU---UUGCGGCgCGC-CCGGCGAC-------------UGCG- -5'
28048 3' -60 NC_005887.1 + 14935 0.74 0.110912
Target:  5'- cGAcgcACGCCGCGCGcuGCCGUacGACGCg -3'
miRNA:   3'- aCUu--UGCGGCGCGCc-CGGCGa-CUGCG- -5'
28048 3' -60 NC_005887.1 + 4615 0.74 0.117233
Target:  5'- aGAugcuCGCCGCgGCGccgguGGCCGCcGGCGCg -3'
miRNA:   3'- aCUuu--GCGGCG-CGC-----CCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 5153 0.73 0.138262
Target:  5'- --cGACGUCG-GCGcGCCGCUGAUGCu -3'
miRNA:   3'- acuUUGCGGCgCGCcCGGCGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.