miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 26403 0.66 0.428947
Target:  5'- cGGcgUGCgGCGCGuGGCCG---GCGCa -3'
miRNA:   3'- aCUuuGCGgCGCGC-CCGGCgacUGCG- -5'
28048 3' -60 NC_005887.1 + 9891 0.67 0.374681
Target:  5'- cGAuccgcACGCCGCGCaGuGGCUGCgcaaccUGAuCGCc -3'
miRNA:   3'- aCUu----UGCGGCGCG-C-CCGGCG------ACU-GCG- -5'
28048 3' -60 NC_005887.1 + 23775 0.67 0.361015
Target:  5'- cUGGAACGCCGCGaCGaGCaugucgcccgcgaaGCcGGCGCc -3'
miRNA:   3'- -ACUUUGCGGCGC-GCcCGg-------------CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 16267 1.12 0.00016
Target:  5'- aUGAAACGCCGCGCGGGCCGCUGACGCg -3'
miRNA:   3'- -ACUUUGCGGCGCGCCCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 35917 0.66 0.419582
Target:  5'- cGGAAUGCCGCGUGuuGCCGUUcaGAUcgGCc -3'
miRNA:   3'- aCUUUGCGGCGCGCc-CGGCGA--CUG--CG- -5'
28048 3' -60 NC_005887.1 + 14559 0.66 0.419582
Target:  5'- ----uCGCCuGCGuCGGcGCCGUcgucaUGGCGCu -3'
miRNA:   3'- acuuuGCGG-CGC-GCC-CGGCG-----ACUGCG- -5'
28048 3' -60 NC_005887.1 + 20520 0.66 0.410343
Target:  5'- uUGAAugGCCguuucauucgGCGCGcccggcagcGCCGCgGACGUc -3'
miRNA:   3'- -ACUUugCGG----------CGCGCc--------CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 33483 0.66 0.409426
Target:  5'- --cGGCGUCGCGaucucgaCGGGCgCGCcGGCGUu -3'
miRNA:   3'- acuUUGCGGCGC-------GCCCG-GCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 37942 0.66 0.392248
Target:  5'- aGGAuCGCCGCGCcu-UCGCcGGCGCg -3'
miRNA:   3'- aCUUuGCGGCGCGcccGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 9197 0.67 0.374681
Target:  5'- cGAAGCaCCGcCGCGgcacggucGGCUGCUucuaccGACGCa -3'
miRNA:   3'- aCUUUGcGGC-GCGC--------CCGGCGA------CUGCG- -5'
28048 3' -60 NC_005887.1 + 1838 0.66 0.383397
Target:  5'- ---cGCGCCGCGUGGuggauGCCGaacacGACGUc -3'
miRNA:   3'- acuuUGCGGCGCGCC-----CGGCga---CUGCG- -5'
28048 3' -60 NC_005887.1 + 26487 0.66 0.40123
Target:  5'- cUGguGCGCCugcugcGCGCGGGCguuucccucgauCGCgccGCGCa -3'
miRNA:   3'- -ACuuUGCGG------CGCGCCCG------------GCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 9622 0.66 0.428947
Target:  5'- -cGAGCGCCGCGCuaccccGCCGUgggUGAacCGCg -3'
miRNA:   3'- acUUUGCGGCGCGcc----CGGCG---ACU--GCG- -5'
28048 3' -60 NC_005887.1 + 13969 0.66 0.383397
Target:  5'- gUGAcGACaGCCGCGaa-GCCGUcGACGCg -3'
miRNA:   3'- -ACU-UUG-CGGCGCgccCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 28141 0.66 0.428947
Target:  5'- cGcgGCGCCGCccugucCGaGGCCGCgcccGACaGCg -3'
miRNA:   3'- aCuuUGCGGCGc-----GC-CCGGCGa---CUG-CG- -5'
28048 3' -60 NC_005887.1 + 27821 0.66 0.40123
Target:  5'- cGAcGCGCCGC-CGacGGCCGCgccUGCa -3'
miRNA:   3'- aCUuUGCGGCGcGC--CCGGCGacuGCG- -5'
28048 3' -60 NC_005887.1 + 15077 0.67 0.374681
Target:  5'- aUGGAAgucgUGCCGaucauuggcgaCGCGGGCCgGCgcgcGAUGCa -3'
miRNA:   3'- -ACUUU----GCGGC-----------GCGCCCGG-CGa---CUGCG- -5'
28048 3' -60 NC_005887.1 + 6311 0.67 0.366099
Target:  5'- cGAGgccuuGCGCCuCGcCGGcGCCGaggUGACGCu -3'
miRNA:   3'- aCUU-----UGCGGcGC-GCC-CGGCg--ACUGCG- -5'
28048 3' -60 NC_005887.1 + 746 0.66 0.428947
Target:  5'- -----gGCCGCGCcGGCCGC---CGCa -3'
miRNA:   3'- acuuugCGGCGCGcCCGGCGacuGCG- -5'
28048 3' -60 NC_005887.1 + 23930 0.66 0.418653
Target:  5'- cGAucAGCGUCGUGCugacgacGGcGCCGC-GGCGUa -3'
miRNA:   3'- aCU--UUGCGGCGCG-------CC-CGGCGaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.